User: Sathish9

Name: Sathish9

Joined: Saturday 02 April 2011 07:57:42 (UTC)

Last seen: Monday 06 February 2012 07:04:50 (UTC)

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Workflow

LONI Pipeline

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Pipeline

Integrated Mapping and Assembly with Quali... (1)

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This workflow contains the first step of a genomics data analysis protocol designed and implemented by Federica Torri, Fabio Macciardi and Ivo Dinov to process large number of sequence data outputted by the Illumina sequencing pipeline. See Step II analysis (GATK/QC/Cleaning) here. This protocol is implemented using the LONI Pipeline environment and includes the following types of computational resources: Mapping and Assembly with Qualities (MAQ) Sequence Alignment and Mapping t...

Created: 2011-04-05 | Last updated: 2011-04-05

Credits: Pipeline

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Workflow

KNIME

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Baj

NGS sample workflow with data (1)

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Sample workflow for NGS data analysis This worklfow relies on community contributions that can be installed through the following update site: http://tech.knime.org/update/community-contributions/nightly specifically the KNIME NGS tools and the KNIME R Scripting extensions.