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Taverna 2

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Magnus Palmblad

Author Publications and Citations by Year ... (1)

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This small workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two REST calls are made. First, we "searchPublications" to retrieve the bibliographic records for all published work of a single author. Then, we "getCitations" to extract the year of all articles citing the work of this author. A conditional JSONPath is here used to only look up citing articles for cited work...

Created: 2016-05-09

Credits: Magnus Palmblad

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Paul Fisher

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Trichuriasis Induced Colitis

Created: 2011-02-16 15:16:17 | Last updated: 2011-02-16 15:16:24

Credits: Paul Fisher

Attributions: Pathways and Gene annotations for RefSeq ids KEGG pathways common to both QTL and microarray based investigations Pathways and Gene annotations for QTL region Pathway and Gene to Pubmed

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of workflow runs for: identifying genes in each of the 7 QTL regions for Trichuris muris infection; identifying genes differentially expressed in mice challenged with Trichuris muris; and Text mining results (including cosine vector scores and Term Enrichment values).

File type: Trident (Package)

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Bharat Singh

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Bharat Singh

Joined: Friday 31 July 2009 13:09:12 (UTC)

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Last active:Tuesday 11 September 2012 06:57:32 (UTC)

Website:http://www.biosemantics.org/index.php?page=bharat-singh | Email (public):singh.bharat [at] live.com

Field/Industry:Research - Biosemantics | Occupation/Role(s):Scientific Researcher

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Fong Chun Chan

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Fong Chun Chan

Joined: Friday 23 November 2007 20:05:36 (UTC)

Bioinformatic Student at Simon Fraser University (SFU). Currently doing a co-op term at the iCapture Centre, St. Paul's Hospital, BC, Vancouber. The project I am working on is DataBiNS: A Data Mining Workflow for Biological Pathways and Non-Synonymous SNPs (nsSNP).

Last active:Wednesday 17 November 2010 21:45:36 (UTC)

Email (public):fongchun [at] interchange.ubc.ca

Field/Industry:Bioinformatics | Occupation/Role(s):Graduate Student

Taverna 1

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Fong Chun Chan

DataBiNS - Data Mining Workflow for Biolog... (2)

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Created: 2007-12-04 | Last updated: 2007-12-04

Credits: Fong Chun Chan

Taverna 1

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Marco Roos

BioAID_ProteinDiscovery_filterOnHumanUnipr... (11)

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This workflow finds proteins relevant to the query string via the following steps: A user query: a single gene/protein name. E.g.: (EZH2 OR "Enhancer of Zeste"). Retrieve documents: finds 'maximumNumberOfHits' relevant documents (abstract+title) based on query (the AIDA service inside is based on Apache's Lucene) Discover proteins: extract proteins discovered in the set of relevant abstracts with a 'named entity recognizer' trained on genomic terms using a Bayesian approach; the AIDA serv...

Created: 2009-05-28

Credits: Marco Roos Martijn Schuemie AID AID_myGrid_collaboration

Attributions: BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter

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wabi

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wabi

Joined: Wednesday 12 May 2010 07:20:41 (UTC)

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Last active:Friday 12 November 2010 10:29:03 (UTC)

Website:http://xml.nig.ac.jp/

Taverna 2

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Saverio Vicario

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Bayesian Phylogenetic Infererence: Input R... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...