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Maria Paula Balcazar-Vargas

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Life Table Response Experiments Fixed design Place e...

Created: 2014-01-29 10:42:06 | Last updated: 2014-08-14 08:04:25

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments place effect workflow provides an environment to analyse one or more matrices (e.g. matrices of different years from the same place) from two or more places. The objective of this workflow is to determine the effects of the research places or localities (2 or more) on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001). LTRE is a retrospectiv...

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Saverio Vicario

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BayesianPhylogeneticInference

Created: 2013-12-11 13:40:50 | Last updated: 2014-05-19 13:01:14

The family propose different steps to perform a bayesian phylogenetic inference

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Saverio Vicario

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Analysis of environmental sequences

Created: 2013-05-07 09:07:57 | Last updated: 2013-05-07 12:14:57

The pack should allow to analysis the differentiation across groups of samples of biological sequence

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Saverio Vicario

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Perform Short Bayesian Phylogenetic Inference

Created: 2013-02-20 15:07:21 | Last updated: 2013-08-21 16:09:33

The Pack contain 3 workflows that perform and validate bayesian phylogenetic inference that differ from the kind of input. The pack is called short because the worlflow require that the user need to keep taverna engine always on for the the time of the analysis. This could be quite problematic for large analysis. In this case search help in the "Perform Long Bayesian Phylogenetic Inference" packIn this pack there are 3 workflows:1) User locally formatted input file (for details in n...

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Saverio Vicario

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Perform Long Bayesian Phylogenetic Inference

Created: 2013-02-20 14:59:31 | Last updated: 2015-06-12 13:48:46

Phylogenetic inference with mrbayes requires long calculation. So is not possible to keep the taverna engine on for the time required for the analysis. The solution is to break the Workflow in 2 part: before and after submission to mrbayes service.In this pack there are 3 workflows for submission:1) User locally formatted input file (for details in nexus format for mrbayes http://mrbayes.sourceforge.net/wiki/index.php/Manual_3.2)2) User is helped by a GUI (graphical user interface) to define ...

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