Group: A Team

News

1. 

   Morgan Taschuk shared Parsed UniProt to PubMed

   

   Uses the parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html ) to retrieve information from PubMed.

   Friday 01 April 2011 12:51:20 (UTC)
2. 

   Morgan Taschuk shared Use UniProt to retrieve InterPro data

   

   Used parsed Uniprot results (see workflow Used parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html ) to retrieve results about the protein from InterPro.

   Friday 01 April 2011 12:50:25 (UTC)
3. 

   Morgan Taschuk shared UniProt to Gene Ontology

   

   Used parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html ) to retrieve results about the protein from Gene Ontology and outputs it in text format.

   Friday 01 April 2011 12:45:56 (UTC)
4. 

   Morgan Taschuk shared Print Protein Information to HTML

   

   Takes in a lot of parameters in order to construct an HTML table to display the information.

   Friday 01 April 2011 12:44:20 (UTC)
5. 

   Morgan Taschuk shared Vaccine Targets Workflow

   

   Comparison of the genome of Bacillus anthracis to closely related strains will allow the discovery of proteins which may be involved in pathogenicity. Based on the biochemical pathways where the protein interacts, vaccines can be designed for these unique proteins. By gaining insight into the biochem …

   Wednesday 30 March 2011 20:45:58 (UTC)
6. 

   Morgan Taschuk shared Drug Target FASTA

    The FASTA file containing the protein sequences of the drug targets from Ondex.

   Wednesday 30 March 2011 10:51:26 (UTC)
7. 

   Morgan Taschuk shared Compile Protein FASTA from Target to Drug file

   

   Uses a tab-delimited file with protein target and drug information (created in Ondex) to compile a protein FASTA file including each target.

   Wednesday 30 March 2011 10:34:40 (UTC)
8. 

   Morgan Taschuk shared Print Analysis Information to HTML

   

   Takes in a lot of parameters in order to construct an HTML header to display the information.

   Tuesday 29 March 2011 16:41:49 (UTC)
9. 

   Morgan Taschuk shared KEGG Pathways and Additional Information from BLAST

   

   Takes in a tab-delimited BLAST file and finds additional information about the target proteins from KEGG, Gene Ontology, Interpro and PubMed.

   Tuesday 29 March 2011 11:16:18 (UTC)
10. 

    Morgan Taschuk shared Threshold BLAST results

    

    Thresholds tab-delimited BLAST results to a certain percent identity.

    Monday 28 March 2011 11:57:56 (UTC)
11. 

    Morgan Taschuk shared Drug Re-Purposing Workflow

    

    The drug repurposing workflow system screens at least 20 bacterial proteomes against this set of proteins that are already being treated against using established drugs. By screening the bacterial proteomes it will be possible to find proteins of highly similar structure to those that are existing dr …

    Friday 25 March 2011 20:06:19 (UTC)
12. 

    Morgan Taschuk shared Extract unique proteins from blast results

    

    The workflow parses uses the tab-delimited BLAST results to determine the unique proteins found in the target genome that have no similarity to the source genome. The workflow parses uses the blast results to determine the unique proteins found in the target genome that have no similairty to the sour …

    Thursday 24 March 2011 19:49:46 (UTC)