Print Analysis Information to HTML

None

//Title:


BufferedWriter out = new BufferedWriter(new FileWriter(outPutFile));

//////////////////////////////////////////////////////////////////
out.write("A-Team | Bioinformatics Solutions  ");

out.write(""+Title+"");


//Design Document Intro
//Beanshell Script:


String[] lines = Intro.split("\n");
String output = "";
for (String line: lines)
{
	output += ""+line+"";
}

out.write(output);


//Target Proteome IDs:
//Beanshell script:


lines = Tid.split("\n");
output = "Target species:";
for (String line: lines)
{
	output+= "    "+line+"";
}

out.write(output);


//Source Proteome IDs:
//Beanshell script:


lines = Sid.split("\n");
output = "Source species:";
for (String line: lines)
{
	output+= "    "+line+"";
}

out.write(output);


//Similarity Measure:
//Beanshell script:


lines = Sim_M.split("\n");
 output = "";
for (String line: lines)
{
	output+= ""+line+"";
}

out.write(output);


//Total List of Identified Proteins:
//Beanshell script:


lines = TotalID_d.split("\n");
output = "Identified proteins:";
for (String line: lines)
{
	output+= "    "+line.split("\t")[0]+"";
}

out.write(output);
//////////////////////////////////////////////////////////////////
out.close();
outputFile = outPutFile;

Name	Description
Header_Output_Intro	Introductory paragraph
Header_Output_outPutFile	Location of the file to write to
Header_Output_Sid	The source species id
Header_Output_Sim_M	A statement about the similarity measure used in the analysis
Header_Output_Tid	Target species ID
Header_Output_Title	The title of the page
Header_Output_TotalID_d	A list of identified proteins

Source	Sink
Header_Output_Intro	Header_Output:Intro
Header_Output_outPutFile	Header_Output:outPutFile
Header_Output_Sid	Header_Output:Sid
Header_Output_Sim_M	Header_Output:Sim_M
Header_Output_Tid	Header_Output:Tid
Header_Output_Title	Header_Output:Title
Header_Output_TotalID_d	Header_Output:TotalID_d
Header_Output:outputFile	Read_Text_File:fileurl
Read_Text_File:filecontents	Read_Text_File_filecontents

Print Analysis Information to HTML

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"+Title+"

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