Group: Bioclipse


 Group around Bioclipse Scripting Language workflows.

Created at: Monday 13 September 2010 10:29:24 (UTC)

Unique name: bioclipse



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    Egon Willighagen shared Groovy script to convert (part of) CGN data into Linked Data
    Converts CGN data from [0] to RDF. It uses intermedia TSV files (never mind the file extensions) for the data tab. The 3char ISO country codes are available at [1], but ideally these are pulled out of Wikidata directly. The RDF uses the Darwin Core ontology, QUDT, and Wikidat …
    Thursday 22 January 2015 12:48:36 (UTC)
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    Egon Willighagen shared Finding nodes in Anopheles gambiae pathways with IUPAC names
    Groovy script to find Anopheles g. metabolites encoded as GPML with OPSIN and provide ChemSpider identifiers.
    Sunday 24 August 2014 14:42:07 (UTC)
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    Egon Willighagen shared Find isotopes with a certain exact match
    This script lists all isotopes matching a certain exact mass (given a certain error) and outputs the symbol, atomic number, and exact match of the search hits.
    Tuesday 30 July 2013 20:53:34 (UTC)
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    Giribio, and Mcasfrox joined the Bioclipse group
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    Egon Willighagen shared Map a Entrez Gene ID to a Gene Ontology ID
     BSL Groovy script that uses BridgeDB to convert a Entrez Gene identifier into a Gene ontology identifier.
    Saturday 07 January 2012 10:01:05 (UTC)
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    Christoph Steinbeck, and Abhik1368 joined the Bioclipse group
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    Egon Willighagen shared Extract chemical structures from a Beilstein Journal of Organic Chemistry paper
     Uses the Oscar4 text mining tool to extract chemical structures from a Beilstein Journal of Organic Chemistry paper and visualizes them in the molecules table. Jericho is used to extract text from the paper's HTML page.
    Thursday 12 May 2011 07:54:41 (UTC)
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    Egon Willighagen created the Bioclipse group
    Monday 13 September 2010 10:29:24 (UTC)

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