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3366?size=60x60 Gb Norman Morrison
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Pack Embedding an R Script in a Workflow Exercise


Created: 2014-02-13 17:47:42 | Last updated: 2014-02-13 17:52:17

This pack has all the files for the problem based learning exercise of embedding an R Script in a workflow

4 items in this pack

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3366?size=60x60 Gb Norman Morrison
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Pack Taverna Tool Service


Created: 2014-02-13 17:40:54 | Last updated: 2014-02-13 17:42:58

Taverna Tool service tutorial pack

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292?size=60x60 Tim Booth
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Blob Rserve on Bio-Linux

Created: 2014-02-13 14:55:21

Credits: User Tim Booth

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The recommended way to run Rserve on Bio-Linux is to install the "r-cran-rserve" package - ie:$ sudo apt-get install r-cran-rserve(Note - this wasn't working on the morning of the 13th but has now been fixed in version 1.7-3-0biolinux2)If you install the library by using install.packages("Rserve") it will work but it will not get updated and will mask the system version of Rserve, which could cause you hard-to-diagnose problems down the line.  My recommendation is...

File type: Trident (Package)

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-13 08:46:17

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial uses Bioinformatics exercises as an introduction to designing and executing workflows with Taverna.

File type: PowerPoint presentation

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3366?size=60x60 Gb Norman Morrison
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Blob Working with the BioVeL Portal

Created: 2014-02-11 16:12:36

Credits: User Norman Morrison User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this exercise we will upload and run a simple workflow that we created in the previous exercises on the BioVeL portal.

File type: PowerPoint 2007 presentation

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3366?size=60x60 Gb Norman Morrison
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Blob Setup instructions for BioLinux VM

Created: 2014-02-11 16:01:51 | Last updated: 2014-02-13 11:06:17

Credits: User Norman Morrison User quevedo79

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Version2

File type: OpenDocument Text

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3366?size=60x60 Gb Norman Morrison
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Blob Embedding an R Script in a Workflow Exercise

Created: 2014-02-11 15:42:26

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This exercise is designed as a problem based learning task to understand how to embed R Scripts in workflows in Taverna.

File type: PowerPoint presentation

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3366?size=60x60 Gb Norman Morrison
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Blob Using R Shell in Taverna workbench

Created: 2014-02-11 14:55:12 | Last updated: 2014-02-13 17:54:04

Credits: User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we wil perform some simple statistical analyses using the RShell processor

File type: PowerPoint presentation

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3366?size=60x60 Gb Norman Morrison
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Blob Exploring the Taverna workflow engine

Created: 2014-02-10 14:45:48 | Last updated: 2014-02-10 14:46:54

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we will explore the Taverna workflow engine, including: 1) iteration; 2) looping; 3) parallel invocation.

File type: PowerPoint presentation

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-06 16:42:14 | Last updated: 2014-02-06 16:44:14

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 2 - An introduction to designing and executing workflows with Taverna. Importing and exporting data.

File type: PowerPoint presentation

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