Content from the Bonn-September 2013 group

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Introduction to Taverna Online & Interaction

Created: 2013-09-06 09:04:41

Credits: Aleksandra Pawlik Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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Introduction to Taverna Components - Bonn 2013

Created: 2013-09-06 07:39:49

Credits: Aleksandra Pawlik Stian Soiland-Reyes Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint 2007 presentation

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XPath service Tutorial

Created: 2013-09-05 12:26:15

Credits: Katy Wolstencroft Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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REST Service Tutorial

Created: 2013-09-05 12:12:56

Credits: Katy Wolstencroft Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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Shims and Beanshells - tutorial

Created: 2013-09-05 09:49:45

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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RShell tutorial

Created: 2013-09-05 09:46:43

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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BioVeL workshop reduced full workflow (1)

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The workflow is a reduced version of the main workflow. It can be used to call web services to support biodiversity research. It fetches data from GBIF. The occurrences are then used to create a model using OpenModeller, test the model and to project the model. The projection of the model is currently a "native projection" i.e. it uses the same layers as those used to create the model. The services within the workflow will allow non-native projections

Created: 2013-09-04

Credits: Katy Wolstencroft Alan Williams

Attributions:

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Introduction to Taverna -part2 - Bonn 2013

Created: 2013-09-03 22:28:51

Credits: Katy Wolstencroft Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

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Pathway to Pubmed (1)

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This workflow takes in a list of KEGG pathway descriptions and searches the PubMed database for corresponding articles. Any matches to the pathways are then retrieved (abstracts only). These abstracts are then returned to the user.

Created: 2013-09-03

Credits: Alan Williams Paul Fisher

Attributions: Pathway to Pubmed

UnigeneID to KEGG Pathways (1)

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This workflow accepts a list of Unigene gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database. This workflow replaces the earlier SOAP version with the new KEGG REST services

Created: 2013-09-03

Credits: Katy Wolstencroft Alan Williams Paul Fisher

Attributions: NCBI Gi to Kegg Pathways