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1404?size=60x60 Gb Christian
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Blob Add a common row to a VOTable CommonRow Example Values

Created: 2014-04-10 12:15:29

Credits: User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This the example Value for the  parameter CommonRow in the workflow Add a common row to a VOTablehttp://www.myexperiment.org/workflows/3552.htmlUsed for CommanLine Testing

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1404?size=60x60 Gb Christian
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Blob Perform Multi-ConeSearch queries to a VO Service Ex...

Created: 2014-04-10 11:59:12

Credits: User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the example input for the workflow Perform Multi-ConeSearch queries to a VO Service http://www.myexperiment.org/workflows/3555.htmlIt is intended for CommandLine  Testing.

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1404?size=60x60 Gb Christian
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Blob Perform Multi-SSA queries to an Spectral VO Service ...

Created: 2014-04-10 10:25:22 | Last updated: 2014-04-10 11:18:14

Credits: User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This File contains the example input value for Perform Multi-SSA queries to an Spectral VO Service http://www.myexperiment.org/workflows/3562.htmlAlso used for Perform Multi-SIA queries to an Image VO Service http://www.myexperiment.org/workflows/3558Intended for Taverna CommandLine testing

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1404?size=60x60 Gb Christian
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Blob Example input for EBI_InterproScan_NewServices

Created: 2014-04-09 16:15:28

Credits: User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an example input file for http://www.myexperiment.org/workflows/4202.html.It contains the example value for the parameter sequence.This was correct at the time of uploading this file.

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1780?size=60x60 Gb Donal Fellows
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Blob QA Object Comparison Component

Created: 2014-03-31 14:58:10 | Last updated: 2014-04-01 10:56:47

License: Creative Commons Attribution-Noncommercial-Share Alike 3.0 Unported License

A SCAPE QA component profile.

File type: Taverna Component Profile

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling pooled data or weighted main matrix

Created: 2014-03-28 14:38:43

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 92-93

Created: 2014-03-28 14:31:44

Credits: User Maria Paula Balcazar-Vargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 91-92

Created: 2014-03-28 14:30:15

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 90-91

Created: 2014-03-28 14:24:33

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 87-88

Created: 2014-03-28 14:22:32

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Pooled_matrix_file_Gentiana_LTRE

Created: 2014-03-27 10:37:46 | Last updated: 2014-08-29 13:23:06

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Pooled_matrix_file or weighted main Matrix - what popbio (R package) calls pooled matrix (to see more details: Horvitz, Schemske and Caswell 1997; Horvitz, and Schemske 1995). This is a matrix in a .txt format, all decimal numbers in each matrix must be indicated by dots e.g.: 0.578.To understand how to calculate a pooled matrix or a weighted main Matrix, please see: Choice of a reference matrix (pag: 253, in Horvitz, Schemske and Caswell 1997). This list of matrices will be used to perf...

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4039?size=60x60 Francisco Quevedo
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Blob TDWG Level 4

Created: 2014-03-21 16:45:54 | Last updated: 2014-03-21 16:46:10

Credits: User Francisco Quevedo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TDWG Level 4

File type: ZIP archive

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Avatar cecilia Amaya
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Blob LOGS

Created: 2014-03-02 22:34:21 | Last updated: 2014-04-18 00:54:19

Credits: User cecilia Amaya

License: Creative Commons Attribution-Share Alike 3.0 Unported License

ESTRUCTURAS CREADAS PARA LOGS:APACHE-ACCESOAPACHE-ERROSENDMAILPOSFIXKERNELSNORT FULLSNORT FAST

File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

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292?size=60x60 Tim Booth
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Blob Setup instructions for BioLinux updated

Created: 2014-02-27 18:14:25

Credits: User Tim Booth User Norman Morrison User Francisco Quevedo

Attributions: Blob Setup instructions for BioLinux VM

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Updated version of the instructions posted by Norman

File type: OpenDocument Text

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688?size=60x60 Us M. Kirsh
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Blob Science, the Virtual and the Actual: a real stand-off

Created: 2014-02-23 01:00:13

Credits: User M. Kirsh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Abstract: The World Wide Web is a source of social encounter occurring over undefined distances. If physical parameters of social encounter are considered uncontrollable for studies in a natural setting, the internet world, when dissected philosophically with respect to physical witnessibility of engaged identities, provides a model in which distance is absent. Upon comparison of meaning in science method and theory as it is necessarily rooted to common perceptional experience, it is proposed...

File type: Adobe PDF

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688?size=60x60 Us M. Kirsh
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Blob Determining the Determined State : a sizing of size ...

Created: 2014-02-23 00:50:50

Credits: User M. Kirsh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Abstract: A philosophical exploration is presented that considers entities such as atoms, electrons, protons, reasoned (in existing physics theories) by induction, to be other than universal building blocks, but artifacts of a sociological struggle that in elemental description is identical with that of all processes of matter and energy. In a universal context both men and materials, when stressed, struggle to accomplish/maintain the free state. The space occupied by cognition, inferred to b...

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292?size=60x60 Tim Booth
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Blob Rserve on Bio-Linux

Created: 2014-02-13 14:55:21

Credits: User Tim Booth

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The recommended way to run Rserve on Bio-Linux is to install the "r-cran-rserve" package - ie:$ sudo apt-get install r-cran-rserve(Note - this wasn't working on the morning of the 13th but has now been fixed in version 1.7-3-0biolinux2)If you install the library by using install.packages("Rserve") it will work but it will not get updated and will mask the system version of Rserve, which could cause you hard-to-diagnose problems down the line.  My recommendation is...

File type: Trident (Package)

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-13 08:46:17

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial uses Bioinformatics exercises as an introduction to designing and executing workflows with Taverna.

File type: PowerPoint presentation

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3366?size=60x60 Gb Norman Morrison
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Blob Working with the BioVeL Portal

Created: 2014-02-11 16:12:36

Credits: User Norman Morrison User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this exercise we will upload and run a simple workflow that we created in the previous exercises on the BioVeL portal.

File type: PowerPoint 2007 presentation

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3366?size=60x60 Gb Norman Morrison
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Blob Setup instructions for BioLinux VM

Created: 2014-02-11 16:01:51 | Last updated: 2014-02-13 11:06:17

Credits: User Norman Morrison User quevedo79

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Version2

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3366?size=60x60 Gb Norman Morrison
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Blob Embedding an R Script in a Workflow Exercise

Created: 2014-02-11 15:42:26

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This exercise is designed as a problem based learning task to understand how to embed R Scripts in workflows in Taverna.

File type: PowerPoint presentation

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3366?size=60x60 Gb Norman Morrison
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Blob Using R Shell in Taverna workbench

Created: 2014-02-11 14:55:12 | Last updated: 2014-02-13 17:54:04

Credits: User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we wil perform some simple statistical analyses using the RShell processor

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3366?size=60x60 Gb Norman Morrison
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Blob Exploring the Taverna workflow engine

Created: 2014-02-10 14:45:48 | Last updated: 2014-02-10 14:46:54

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we will explore the Taverna workflow engine, including: 1) iteration; 2) looping; 3) parallel invocation.

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-06 16:42:14 | Last updated: 2014-02-06 16:44:14

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 2 - An introduction to designing and executing workflows with Taverna. Importing and exporting data.

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3366?size=60x60 Gb Norman Morrison
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Blob 03E_species_list_2.xls

Created: 2014-02-06 16:09:11

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

File type: Trident (Package)

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3366?size=60x60 Gb Norman Morrison
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Blob 03D_species_2.txt

Created: 2014-02-06 16:08:26

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

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3366?size=60x60 Gb Norman Morrison
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Blob 03C_species_list_1.xls

Created: 2014-02-06 16:02:27

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

File type: Trident (Package)

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3366?size=60x60 Gb Norman Morrison
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Blob 03B_species_1.txt

Created: 2014-02-06 15:19:41 | Last updated: 2014-02-06 16:03:18

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

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3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-06 14:52:19 | Last updated: 2014-02-06 16:45:12

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 1 - An introduction to designing and executing workflows with Taverna. Building a simple workflow.

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3377?size=60x60 Gb Jon Giddy
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Blob Partition Years Interaction Page

Created: 2014-02-04 10:52:30 | Last updated: 2014-02-06 12:33:46

Credits: User Jon Giddy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Interaction page to allow a range of years to be grouped

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3377?size=60x60 Gb Jon Giddy
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Blob Partition Years Javascript

Created: 2014-02-04 10:50:20

Credits: User Jon Giddy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Javascript part of an interaction page to partition a range of years into groups. 

File type: JavaScript

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 89-90

Created: 2014-01-29 11:46:02 | Last updated: 2014-03-28 14:18:57

Credits: User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflows:Life Table Response Experiments (LTRE) Fixed design Place effects V1 (http://www.myexperiment.org/packs/574.html) and Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperi...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 88-89

Created: 2014-01-29 11:44:47 | Last updated: 2014-03-28 14:18:17

Credits: User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflows:Life Table Response Experiments (LTRE) Fixed design Place effects V1 (http://www.myexperiment.org/packs/574.html) and Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperi...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Lochem 89-90

Created: 2014-01-29 11:42:38

Credits: User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Life Table Response Experiments (LTRE) Fixed design Place effects V1 (http://www.myexperiment.org/packs/574.html). If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den ...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Dwingeloo 1 88-89

Created: 2014-01-29 11:22:20

Credits: User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Life Table Response Experiments (LTRE) Fixed design Place effects 1 (http://www.myexperiment.org/packs/574.html) If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 1...

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Using R service in Taverna - Introduction

Created: 2014-01-22 13:29:52

Credits: User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to using R service in Taverna workflows.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to building workflows with Taverna

Created: 2014-01-22 13:28:47

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to building workflows with Taverna for the Cranfield University course.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Cranfield - Introduction to webservices and workflows

Created: 2014-01-22 13:27:41

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to workflows, web services and Taverna for the Cranfield University.

File type: PowerPoint presentation

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4144?size=60x60 De Alexey Mints
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Blob MOC finder

Created: 2014-01-22 13:20:46 | Last updated: 2014-10-06 11:00:19

Credits: User Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Class to search for positions in HEALPix Multi-Order Coverage maps.See http://www.ivoa.net/documents/MOC/20130910/WD-MOC-1.0-20130910.htmlMOCs can be prepared with Aladin or stilts or downloaded fromhttp://alasky.u-strasbg.fr/footprints/tables/vizier/ 

File type: text/x-python

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Avatar Mark Rogers
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Blob simple FASTA workflow

Created: 2014-01-22 11:45:23 | Last updated: 2014-01-22 11:45:41

Credits: User Mark Rogers

License: Creative Commons Attribution-Share Alike 3.0 Unported License

simple FASTA workflow

File type: Trident (Package)

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Test Data for Rservice Tutorial-Biodiversity

Created: 2014-01-19 14:38:17

Credits: User Aleksandra Pawlik User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Test data for R service tutorial usage in Taverna.

File type: Excel workbook

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4011?size=60x60 Gb Alex Nenadic
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Blob BiodiversityCatalogue presentation

Created: 2013-12-06 13:50:51 | Last updated: 2013-12-06 13:52:46

Credits: User Alex Nenadic

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A set of slides on how to use and register services in BiodiversityCatalogue (presented by Aleksandra Nenadic at the Taverna workshop, 5-6 december 2013, Manchester).

File type: PowerPoint 2007 presentation

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1217?size=60x60 Gb Alan Williams
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Blob Help information powerpoint

Created: 2013-12-06 10:01:54

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A set of slides about where to seek help

File type: PowerPoint presentation

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4144?size=60x60 De Alexey Mints
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Blob f90-build

Created: 2013-12-05 12:07:43

Credits: User Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple script to build f90 program with all required modules (all of "use" statesments).

File type: application/x-shellscript

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4144?size=60x60 De Alexey Mints
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Blob fits/votable to SQL converter

Created: 2013-12-05 11:53:20 | Last updated: 2013-12-19 10:24:00

Credits: User Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple python script to convert Fits file or VO-table to SQL database.Optimized for PostgreSQL, but easily modified for anything else.So far only SQL-script preparation is done. You can execute the output Yourself.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna Workbench

Created: 2013-12-05 10:37:24 | Last updated: 2013-12-05 10:55:47

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to Taverna Workbench - building workflows, using different data input formats, saving results, using Shim services.

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3366?size=60x60 Gb Norman Morrison
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Blob Biodiversity Test Data for Rservice Tutorial

Created: 2013-12-04 22:27:38 | Last updated: 2013-12-04 22:29:48

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A small hypothetical set of species incidence data from 4 species measured from 6 sites, for use with the "Performing statistical analyses using the Rshell processor " tutorial.

File type: text/csv

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob RShell Tutorial for Taverna Workbench

Created: 2013-12-04 18:18:23

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RShell Tutorial for Taverna Workbench - using Rshell service in workflows.

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Taverna Components Tutorial

Created: 2013-12-04 18:17:05

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna Components Tutorial: creating and using components

File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Taverna Workbench Engine Tutorial

Created: 2013-12-04 18:16:09

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna Workbench Engine Tutorial: cross and dot product, iteration, looping and control links.

File type: PowerPoint presentation

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