myExperiment

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Helen Hulme

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Bonn Taverna Presentation - Case Studies

Created: 2012-09-04 10:17:41 | Last updated: 2012-09-04 13:45:55

Credits: Helen Hulme Katy Wolstencroft Paul Fisher Shoaib Sufi Mcornell Robert Haines

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Presentation comparing and contrasting Taverna workbench use on two case studies: 1. African Sleeping Sickness (Trypanosomiasis) Wellcome Trust Project 2. NHS / TSB SNP annotation pipeline

File type: PowerPoint 2007 presentation

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Katy Wolstencroft

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Bonn Tutorial REST services

Created: 2012-09-03 19:34:12

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a brief introduction to using REST servicces through Taverna

File type: PowerPoint presentation

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Katy Wolstencroft

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Bonn Tutorial Different Service Types

Created: 2012-09-03 19:32:32

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thie tutorial introduces you to using different types of services with Taverna - e.g. asynchronous, biomart and soaplab

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Magnus Palmblad

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rt3.c

Created: 2012-09-03 10:36:54 | Last updated: 2012-09-03 10:42:13

Credits: Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Linear retention time prediction training rt, version 3.0 with improved command-line interface and format options.

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Katy Wolstencroft

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Bonn Taverna Shims

Created: 2012-08-30 14:18:06

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to finding, using and designing Shim services for Taverna workflows

File type: PowerPoint presentation

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Katy Wolstencroft

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Bonn Taverna WF Engine

Created: 2012-08-30 14:15:51

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to using the advanced features of the Taverna workflow engine, such as iterations, looping etc

File type: PowerPoint presentation

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Katy Wolstencroft

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Bonn Taverna Intro Tutorial

Created: 2012-08-30 14:11:55

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to designing, combining and sharing workflows with Taverna and myExperiment

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Anja Le Blanc

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HELIO Service List for Taverna 2.4

Created: 2012-08-30 09:45:06

Credits: Anja Le Blanc

License: BSD License

Import HELIO SOAP web services from this file. This works for Taverna 2.4. Pervious service lists cause problems while importing them.

File type: XML

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Katy Wolstencroft

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Bozeman Tutorial

Created: 2012-08-22 09:59:37

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to designing and using Taverna workflows and myExperiment. It was created for the workshop "Making Sense of Biological Systems:Using Knowledge Mining to Improve and Validate Models of Living Systems", at Montana State University Aug 2012

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Drkrish...

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STUDY OF QUANTIFICATION OF IMPURITIES AND RELATED SU...

Created: 2012-08-13 16:46:39

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Bulk drug during its production process, after its scale up, it is necessary to analyse for the presence of any impurities or related substances in it. This is to ensure the impurities and related substances are within their limits as per ICH Guidelines. The impurities and related substances are defined as; Impurity: Any component present in the drug substance or drug product which is not the desired product, a product-related substance, or excipient including buffer com...

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Khalid Belhajjame

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Execution traces copied from the vistrails console ...

Created: 2012-08-06 11:00:38

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the execution trace as it appeared in the Vistrailsworkbench of the workflow that retrieves the pathways associated with given kegg gene identifier.

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Khalid Belhajjame

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Provenance traces of the Gene To Pathway Taverna Wor...

Created: 2012-08-06 10:58:38

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the provenance trace in Janus of the Tavrerna workflow that retrieves the pathways associated with given kegg gene identifier.

File type: RDF data

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Khalid Belhajjame

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Provenance traces of the Gene To Pathway Taverna Wor...

Created: 2012-08-06 10:57:37

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the provenance trace in provo of the Tavrerna workflow that retrieves the pathways associated with given kegg gene identifier.

File type: ZIP archive

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Program...

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Combined workflow from my master work

Created: 2012-08-03 11:13:35

Credits: Programmerva

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Here is two workflows is combined to one workflow. One part of this workflows is taken from MyExperiment.

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Cherian Mathew

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Data Refinement Workflow Utility Jar (Current Version)

Created: 2012-07-26 14:56:42 | Last updated: 2012-11-07 08:48:49

Credits: Cherian Mathew

License: Creative Commons Attribution-Share Alike 3.0 Unported License

jar which includes all utility classes with functionality used in the Data Refeinement workflow

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Drkrish...

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Process for the preparation of amorphous atorvastati...

Created: 2012-07-24 12:07:03

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Atorvastatin calcium is a drug compound that is used as a lipid-lowering agent, fortreating hypercholesterolemia. The compound has the chemical name[R-(R*,R*)]-2-(4-fluorophenyl)-3,ö-dihydroxy-5-(1-methylethyl)-3-phenyl-4-{(phenylamino)carbonyl}-1H-pyrolle-1-hepatonic acid, calcium salt (2:1) trihydrate. Pharmaceutical productscontaining crystalline atorvastatin calcium trihydrate are sold using the trademarkLIPITOR.

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Drkrish...

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Novel polymorph of 5-cyanopthalide high purity inter...

Created: 2012-07-24 12:02:16

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The present invention relates to obtaining a new polymorph of 5-Cyanophthalide in highly pure form (99.5 to 99.99%), which is an intermediate used forthe synthesis of citalopram& escitalopram both of which are potent antidepressant drugs.Moreover this new polymorph of 5-cyanophthalide does not contain impurities liketerephthalic acid & diphthalide derivatives.

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Drkrish...

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Enantioselective method of synthesizing methylphenid...

Created: 2012-07-24 11:51:52

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Process for the preparation of enantioselective method of making methylphenidate and derivatives . The method involves use of a rhodium catalyst, and selectively produces the D-enantiomer of the methylphenidate derivative in excess of the L-enantiomer . Furthermore, the method selectively produces the threo-diastereomer in excess of the erythro-diastereomer. The method is thus suitable for synthesis of D-threo-methylphenidate (the biologically active form of this compound) and derivatives &...

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Drkrish...

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Quality Assurance and GMP and ICH

Created: 2012-07-24 11:46:03

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Quality Assurance is a planned and systematic approach to generate enough confidence in the quality of the product and processes in the long run as per the specifications." In this biog you will find post related to ICH, GMP and Quality related matters.

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Drkrish...

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GLIBENCLAMIDE Complexes ( Complexes of Mg,Cr,Ni,Zn a...

Created: 2012-07-24 11:33:50 | Last updated: 2012-07-24 11:33:51

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The N-acetyl derivative of β-phenethylamine is reacted with chlorosulfonic acid to form the para sulfonyl chloride derivative. This is then subjected to ammonolysis, followed by base-catalyzed removal of the acetamide. This is then acylated with 2-methoxy-5-chlorobenzoic acid chloride to give the amide intermediate. This is then reacted with cyclohexyl isocyanate to yield the sulfonylurea glibenclamide

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Drkrish...

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HOW TO START ANALYTICAL METHOD DEVELOPMENT

Created: 2012-07-24 11:28:31

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A bulk drug during its production process, after its scale up, it is necessary to analyse for the presence of any impurities or related substances in it. This is to ensure the impurities and related substances are within their limits as per ICH Guidelines.The impurities and related substances are defined as; Impurity: Any component present in the drug substance or drug product which is not the desired product, a product-related substance, or excipient including buffer components. I...

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Drkrish...

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DEFINITION â€œIMPURITYâ€

Created: 2012-07-24 11:18:54

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Impurities are normally generated during the formation of Active PharmaceuticalIngredients and their intermediates. Chances of their generation during Drug Productsformation are less as formulation is a physical blending process. Care is taken that theseexcipients do not react with each other to produce the degradants. They may consist oforganic and inorganic, and define levels at which impurities/degradants should beidentified.ICH Q3A covers drug substances and Q3B covers drug products. Th...

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Drkrish...

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Improved process for preparing L-phenylephrine hydro...

Created: 2012-07-24 11:12:15

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The present invention relates to an improved process for preparing L-phenylephrinehydrochloride on an industrial scale

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Drkrish...

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PROCESS FOR PREPARATIN OF VITAMIN-C-Dr.krishnasarma ...

Created: 2012-07-24 11:03:13

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Ascorbic acid (vitamin C) is a water-soluble vitamin. It occurs as a white or slightly yellowcrystal or powder with a slight acidic taste. It is an antiscorbutic product. On exposure to light, itgradually darkens. In the dry state, it is reasonably stable in air, but in solution it rapidlyoxidizes. Ascorbic acid (vitamin c) is freely soluble in water; sparingly soluble in alcohol;insoluble in chloroform, in ether, and in benzene. The chemical name of ascorbic acid (vitaminc) is L-ascorbic a...

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Drkrish...

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Industrial process for preparation of Levetiracetam....

Created: 2012-07-24 10:59:51

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Levetiracetam belongs to the class of compounds used in the treatment of epilepsy so it.has huge demand in market and it is worth to develop the product.

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