File Entry: Meme parser

This R script is designed to parse and process MEME motif analysis output files from a directory containing results for different sequence orientations (convergent, divergent, and same) in the context of small open reading frames (sORFs). The script loads necessary libraries, defines functions to parse individual MEME output files (parse_meme_output) and process directories containing these files (process_meme_results). It extracts key information such as motif patterns, widths, number of sites, and E-values, and organizes this data into a structured dataframe. The script then filters the motifs based on a significance threshold (E-value < 0.001), arranges them by E-value, and saves the enriched motifs to a CSV file for further analysis. The final output provides a concise summary of significant motifs identified in the MEME analysis.