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RapidMiner
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2615?size=60x60 Hr Ninoaf

Workflow Write activity web service (1)

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 When the specific user $i$ "consumes" certain item $j$ the write activity web service is called, which writes activity $(i,j)$ to \textit{train set table} and removes recommendation $j$ for user $i$ from \textit{item recommendation table} in SQL database.

Created: 2012-05-11 | Last updated: 2012-05-11

RapidMiner
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3682?size=60x60 Hr Matija Piskorec

Workflow Execution time measurement for Rapidminer ... (1)

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This is a workflow that measures execution times of various RapidMiner operators on random polynomial classification datasets of various sizes in the range of 4 to 2000 examples and attributes.

Created: 2012-05-11 | Last updated: 2012-05-11

RapidMiner
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2615?size=60x60 Hr Ninoaf

Workflow Front-end Recommendation Web Service (1)

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 Front-end recommendation web service has a simple job to query the cached recommendations from the \textit{item recommendation table}

Created: 2012-05-11 | Last updated: 2012-05-11

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2615?size=60x60 Hr Ninoaf
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Pack Recommender system engine in RapidAnalytics


Created: 2012-05-11 12:54:44 | Last updated: 2012-06-20 14:47:43

 Here we provide four workflows that build the recommender engine by using the recommender extension. The Recommender Extension can be downloaded from the Rapid-I Marketplace from: http://rapidupdate.de:8180/UpdateServer/faces/product_details.xhtml?productId=rmx_irbrecommender . More details can be found: http://elico.rapid-i.com/recommender-extension.html      

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Blob Prediction of Protein Residue Contact Using Support ...

Created: 2012-05-11 02:44:49

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Prediction of protein residue contact is one of the important two-dimensional prediction tasks in protein structure prediction. The residue contact map of protein contains information which represents three-dimensional conformation of protein. However the accuracy of the prediction is dependent on the type of protein information used to distinguish between contacts or noncontacts. According to CASP (Critical Assessment of Techniques of Protein Structure Prediction) the accuracy o...

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Blob Predicting Protein Secondary Structure with Neural N...

Created: 2012-05-11 02:34:20

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Protein secondary structure prediction has benefited largely from the improvements in machine learning techniques. A novel neural network classifier based on the Dempster-Shafer theory has been introduced by Denoeux. It demonstrated favourable performance in some artificial and real world problems when compared against methods such as Support Vector Machines and Kernel Fisher Discriminants. However, it has not been used for protein secondary structure prediction. In this work, we examin...

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Blob Pathway-Based Microarray Analysis for Defining Stati...

Created: 2012-05-11 02:33:00

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 In this reiew, we have discussed about approaches in pathway based microarray analysis. Commonly, there are two approaches in pathway based analysis, Enrichment Score and Supervised Machine Learning. These pathway based approaches usually aim to statistically define significant pathways that related to phenotypes of interest. Firstly we discussed an overview of pathway based microarray analysis and its general flow processes in scoring the pathways, the methods applied in both a...

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Blob Parameter Estimation for Simulation of Glycolysis Pa...

Created: 2012-05-11 02:28:43 | Last updated: 2012-05-11 02:28:44

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 An improved differential evolution (DE) algorithm is proposed in this paper to optimize its performance in estimating the germane parameters for metabolic pathway data which is used to simulate glycolysis pathway for Satcharomyces cerevisiae. This study presents an improved algorithm of parameter sensitivity test into the process of DE algorithm. The result of the improved algorithm is testified to be better than the other estimation algorithms. The outcomes from this study promot...

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Blob Optimized Local Protein Structure with Support Vecto...

Created: 2012-05-11 02:27:24

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Protein includes many substances, such as enzymes, hormones and antibodies that are necessary for the organisms. Living cells are controlled by proteins and genes that interact 1fo1sngh complex molecular pathways to achieve a specific function. These proteins have different shapes and structures which distinct them from each other. By having unique structures, only proteins able to carried out their function efficiently. Therefore, determination of protein structure is fundamental...

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Blob One-Class Classifier to Predict Protein-Protein Inte...

Created: 2012-05-11 02:25:30

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Protein-protein interactions are important in a wide range of biological processes. The development of drugs that target such interactions is a very active research field. Hence predicting protein-protein interactions represent an important challenge in bioinformatics research. Machine learning techniques have been applied to predict protein-protein interactions. Most of these techniques address this problem as a binary classification problem. While it is easy to get a dataset of...

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