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Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Eigen analysis pack


Created: 2014-07-03 15:57:49 | Last updated: 2014-07-25 11:18:57

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Eigen analysis workflow provides an environment for the analysis of a stage-matrix and perform several analyses on it.The Eigen analysis results are a set of demographic statistics:Lambda or dominant eigenvalue (λ).The stable stage distribution (w).The sensitivity matrixThe Elasticity matrix.Reproductive value (v).The damping ratio (ρ).

3 items in this pack

Comments: 0 | Viewed: 66 times | Downloaded: 38 times

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Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Stages vectors plots, Survival and Growth ... (2)

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The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices: - Survival values calculations per stage per year and its respective plot; - Growth rates (lambda) calculations per year and its respective plot; - Stage Vectors calculations and their respective plots. ====================================================== This workflow requires an instance of Rserve on localhost This workflow has been creat...

Created: 2014-07-02 | Last updated: 2014-08-29

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Damping ratio pack


Created: 2014-07-02 13:32:31 | Last updated: 2014-07-25 11:07:16

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Damping ratio pack contains a workflow that provides an environment to calculate the damping ratio of several matrices and plot them.The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges ...

8 items in this pack

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Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Age specific survival analysis pack


Created: 2014-07-02 11:49:01 | Last updated: 2015-05-19 09:46:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The age-specific survival analysis pack has a workflow that analyse the basic information on the mean, variance and coefficient of variation (CV) of the time spent in each stage class and the mean and variance of the time to death.Analyses:Fundamental matrix (N)Variance (var)Coefficient of variation (CV)MeanetaVareta

3 items in this pack

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Creator
4084?size=60x60 Yuliya Fetyukova
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Pack usability test pack4


Created: 2014-06-30 12:23:23 | Last updated: 2014-06-30 12:24:21

test

1 item in this pack

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test
Uploader
4084?size=60x60 Yuliya Fetyukova

Workflow usability test workflow (1)

test

Created: 2014-06-30 | Last updated: 2014-06-30

Credits: User Yuliya Fetyukova

Uploader
Avatar Amrish Mahes
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Blob example output of the concept profile generation pip...

Created: 2014-06-26 14:52:48

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an example output the workflow "Concept Profile Generation Pipeline" produces when the input for the thesaurus is the thesaurus example in the workflow itself and the abstract input is from the SQL file named "example standard input for Concept Profile Generation Pipeline". This SQL file needs to be run in a SQL program with a pre-created database/schema called mydb. It produces 5 tables. These consists out of the co-occurrence, occurrence, unce...

File type: Trident (Package)

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Uploader
Avatar Amrish Mahes
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Blob example standard input for Concept Profile Generatio...

Created: 2014-06-26 14:36:00

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a SQL file containing example standard input values for testing the concept profile generation pipeline. Run this SQL file in your SQL program with a pre-created database/schema named mydb. It will insert 1 table called abstracts with 10 abstracts and their pubmed id. The workflow will use this table as input for finding concept occurrences. 

File type: Trident (Package)

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Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Damping ratio (2)

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The Damping ratio Workflow provides an environment to calculate the damping ratio of several matrices and plot them. The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges. ============================================================= This workflow requires an instance of Rse...

Created: 2014-06-25 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

Creator
Avatar John Pybus
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Pack Test Pack


Created: 2014-06-25 12:46:21 | Last updated: 2014-06-25 16:27:41

Testing Pack as RO

2 items in this pack

Comments: 1 | Viewed: 23 times | Downloaded: 5 times

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