myExperiment - Workflows

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RapidMiner

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Sabrina Kirstein

Example process of the Text and Web Mining... (1)

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This example process crawls the web (RapidMiner forum) for entries, extracts the information with the Process Documents operator and applies Clustering on the results. The process shows the interaction between the Web Mining Extension and the Text Mining Extension from RapidMiner.

Created: 2014-12-04

RapidMiner

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Sabrina Kirstein

Example Process RapidMiner Multimedia Mini... (1)

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This example process can be used with the Multimedia Extension (http://www.burgsys.com/) in RapidMiner Studio. It shows how to create a QR code with the extension, and how to make image transformations.

Created: 2014-12-04 | Last updated: 2014-12-04

Galaxy

Uploader

Bruno Fosso

BioMaS Illumina Workflow (1)

BioMaS (Bioinformatic analysis of Metagenomic AmpliconS) is a bioinformatic pipeline designed to support biomolecular researchers involved in taxonomic studies of environmental microbial communities by a completely automated workflow, comprehensive of all the fundamental steps, from raw sequence data arrangement to final taxonomic identification, that are absolutely required in a typical Meta-barcoding HTS-based experiment. This BioMaS version allows the analysis of both bacterial a...

Created: 2014-11-27 | Last updated: 2014-11-27

Credits: Pasquale Notarangelo

Taverna 2

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Renato De Giovanni

Project

ENM resolution mix - single run version (6)

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Single run version of the workflow for comparing results of two kinds of ecological niche models: one using only low resolution layers and the other using a random mix of low and high resolution layers. Users select the study region and the environmental variables considered to be the main drivers of a virtual species niche. The workflow is all based on the ENM components, which use the openModeller Web Service (OMWS). After getting initial parameters from the user, the workflow generates a r...

Created: 2014-11-18 | Last updated: 2015-04-04

Credits: Renato De Giovanni BioVeL

Taverna 2

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Renato De Giovanni

Project

ENM resolution mix - multiple runs version (10)

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Multiple runs version of the workflow for comparing results of two kinds of ecological niche models: one using only low resolution layers and the other using a random mix of low and high resolution layers. Users select the study region and the environmental variables considered to be the main drivers of a virtual species niche. The workflow is all based on the ENM components, which use the openModeller Web Service (OMWS). After getting initial parameters from the user, the workflow generates ...

Created: 2014-11-13 | Last updated: 2015-05-12

Credits: Renato De Giovanni BioVeL

Taverna 2

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Renato De Giovanni

Project

select_random_points_based_on_threshold (2)

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Selects random presence and/or absence points given a threshold and a set of points with the corresponding model values.

Created: 2014-11-13 | Last updated: 2015-05-11

Credits: BioVeL

Taverna 2

Uploader

Renato De Giovanni

Project

define_frequently_used_constants (3)

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Defines constants that are frequently used as parameters for ENM Components. When building a new workflow with ENM Components, some constant values will likely be used multiple times as parameters. This component conveniently defines the most frequently used constants so that users can directly connnect them to the corresponding input ports without needing to manually create each constant.