Workflows

Cross-references search, duplicated genes ... (1)

• Download

This workflow is composed of 3 steps: -First, it search for Ensembl gene Ids matching a list of identifier, using the GenOuest Xref webservice. -Then it uses the Duplicated Genes Database webservice to search for duplication information about each found gene. -Finally, it uses the GenOuest Xref webservice to fetch external identifier for each found gene (GO term in this example).

Created: 2010-03-16 | Last updated: 2010-03-16

Credits: abretaud

[untitled] (1)

• Download

No description

Created: 2010-03-16

Credits: Paul Fisher

Split multi-sequence FASTA file into list (1)

• Download

Splits a flat file containing multiple fasta sequences into a list of fasta sequences.

Created: 2010-03-16

microRNA to KEGG Pathways and Abstracts (1)

Workflow takes in a text file of microRNAs from microCOSM (at the EBI) and outputs a list of KEGG pathway information, including genes in pathways and pathway abstracts from PubMed. The results can then be used in various text mining applications/workflows to rank the results against a given disease.Workflow takes in a file of microRNAs

Created: 2010-03-17

Credits: Paul Fisher

Attributions: Pathways and Gene annotations for QTL region

Log into Alitora system (1)

A nested workflow to be used for logging into Alitora

Created: 2010-03-17

Credits: Peter Li

Log out from Alitora system (1)

A nested workflow to be used for logging out of Alitora

Created: 2010-03-17 | Last updated: 2010-03-17

Credits: Peter Li

Test workflow for logging into Alitora and... (1)

No description

Created: 2010-03-17

Credits: Peter Li

Convert to KEGG ID (1)

• Download

Convert another database ID to a KEGG ID. Valid namespaces are NCBI_gi, GebBank, UniProt, UniGene, PMID or OMIM.

Created: 2010-03-17 | Last updated: 2010-03-17

Credits: White duncan100

Visualise KDA output data with Cytoscape (2)

This workflow retrieves a data file on a web server directory and launches Cytoscape to visualise it.

Created: 2010-03-18 | Last updated: 2010-03-18

Credits: Peter Li

Part 2 (1)

• Download

No description

Created: 2010-03-18

Credits: White duncan100