myExperiment - Workflows

Taverna 2

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Weka Clustering With Silhouette Analysis A... (2)

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This workflow clusters given QSAR CSV file and performs a silhouette analysis which is visualised in a PDF file. The QSAR data is loaded from a CSV file and converted into a Weka dataset. After that the data is clustered and the results are visualised in a PDF file.

Created: 2011-01-13 | Last updated: 2011-07-21

Taverna 1

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Hamish McWilliam

InterProScan (SOAP) (1)

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Perform an InterProScan search using the EMBL-EBIâ€™s InterProScan (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap). The query sequence to use is the input, the other parameters for the search are allowed to default.

Created: 2010-12-03 | Last updated: 2013-03-28

Credits: Hamish McWilliam

Attributions: EBI_InterProScan InterProScan (SOAP)

Taverna 2

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Hamish McWilliam

InterProScan (SOAP) (1)

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Perform an InterProScan search using the EMBL-EBIâ€™s InterProScan (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap). The query sequence to use is the input, the other parameters for the search are allowed to default.

Created: 2010-12-03 | Last updated: 2013-03-28

Attributions: EBI_InterProScan

Taverna 1

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Hamish McWilliam

NCBI BLAST (SOAP) (1)

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Perform a BLAST search using the EMBL-EBIâ€™s NCBI BLAST (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/sss/ncbi_blast_soap). The query sequence, database to search and BLAST program to use are inputs, the other parameters for the search are allowed to default.

Created: 2010-11-29 | Last updated: 2013-03-28

Credits: Hamish McWilliam

Attributions: EBI_NCBI_BLAST NCBI BLAST (SOAP)

Taverna 2

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Alan Williams

Get image URLs from HTTP document and outp... (2)

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Retrieve the web page at http://www.mygrid.org.uk, examine it for images and output the images.

Created: 2010-10-29 | Last updated: 2014-02-12

RapidMiner

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Sebastian land

Using Remember / Recall for "tunneling" re... (1)

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This process shows how Remeber and Recall operators can be used for passing results from one position to another position in the process, when it's impossible to make a direct connection. This process introduces another advanced RapidMiner technique: The macro handling. We have used the predefined macro a, accessed by %{a}, that gives the apply count of the operator. So we are remembering each application of the models that are generated in the learning subprocess of the Split validation. Af...

Created: 2010-04-29 | Last updated: 2012-01-16

Taverna 2

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Andrew David King

Test for Orthologues (1)

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Warning: The files are hardcoded in to the beanshell of this workflow. Given an orthlog file for an organism from http://www.ebi.ac.uk/integr8/FtpSearch.do? orgProteomeId=22602, find proteins that are orthologous to proteins in another oragnsims, e.g., B.subtils. Outputs percent.