Workflows

Metavisitor: Workflow for Use Case 1-2 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server

Created: 2016-05-13 | Last updated: 2017-04-17

Metavisitor: Workflow for Use Case 1-1 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Data Mining Recommender (4)

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Scientific workflow for the recommender construction 

Created: 2014-10-29 | Last updated: 2018-09-20

Credits: respinosa

MsaPAD: Multiple Sequence Alignment - Inpu... (2)

BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform a Multiple DNA sequence alignment coding for multiple/single protein domains Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description This workflow is used to submit the multip...

Created: 2014-07-30 | Last updated: 2015-06-12

Credits: Bachirb Giacinto Donvito Pasquale Notarangelo Saverio Vicario Graziano Pesole

Attributions:

Imagemagick convert - tiff/png/bmp/jpeg2ti... (2)

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Converts tiff to tiff/png/bmp/jpeg using imagemagick convert with the provided compression

Created: 2014-02-14 | Last updated: 2014-11-06

Credits: Markus Plangg

MrBayes (10)

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using slow paced JSTasync 1

Created: 2013-12-11 | Last updated: 2014-06-19

JSTAsync1 (6)

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slow down job retrival to one every 60 sec

Created: 2013-12-11 | Last updated: 2014-06-19

JSTAsync2 (7)

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slow down loops to 60 sec

Created: 2013-12-11 | Last updated: 2014-06-19

Annotate gene list with top ranking concepts (4)

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This workflow annotates a comma separated gene list with a predefined concept set as for example Biological processes or Disease/syndrome. To obtain the particular id for each concept set (e.g. "5" for Biological processes), the workflow listPredefinedConceptSets needs to run first. The output provides us with the top (cutoff) concepts that describe our gene list of interest The workflow is using the anni web services .

Created: 2013-12-03 | Last updated: 2015-04-03

Credits: Eleni