Julian Garrido's Workflows

Ajusting galaxy paramenters using sextractor (5)

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This workflow creates configuration files for sextractor, it runs sextractor using this configuration files, it adds sextractor results to the input votable and adds new calculated columns. This task requires a votable as input, a template, a vocabulary and the specification of the column names that contain some required files (configuration files, image files, ...). These files must be accesible from taverna. Sextractor is called by an bash script as 'sex'. Every row in the votable cotains ...

Created: 2012-07-26 | Last updated: 2012-09-07

Credits: Julian Garrido

Attributions: Create configuration files from a template and a votable Run sextractor using a votable Create votable from sextractor results Add columns to a votable resulting from executing sextractor.

Create votable from sextractor results (2)

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The workflow creates a votable from the results provided by sextractor (votables). It returns this table and an aditional table that is joined to the input table. It requires a votable that contains a column with the file name resulting from running sextractor and such files accesible from taverna. It uses astrotaverna plugin (http://wf4ever.github.com/astrotaverna/).

Created: 2012-07-26 | Last updated: 2012-08-21

Credits: Julian Garrido

Run sextractor using a votable (2)

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It runs sextractor and adjust the paramenters specified. This workflow has a dependency on the stil library (http://www.star.bris.ac.uk/~mbt/stil/). Sextractor is called by an bash script as 'sex'. Sextractor is called for every row in the votable. Columns where the configuration file and the image file name are defined must be especified. These files should be accesibles from taverna. ExperimentFolder provides the root folder for the experiment. If the configuration files contain refer...

Created: 2012-07-26 | Last updated: 2012-09-07

Credits: Julian Garrido

Create configuration files from a template... (1)

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This workflow uses astrotaverna artifacts. It creates files by using a template whose keys are replaced by data from a votable. A configuration file is created for every row in the votable. The keys must appear also in the vocabulary file and match column names in the votable. A column in the votable must contain the name of the result configuration file.

Created: 2012-07-26 | Last updated: 2012-09-04

Credits: Julian Garrido

Convert table to CDS format (1)

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It converts a csv file (comma separated values) to the CDS format. It also provides relevant information to create the ReadMe file. The first row in the input file must be the column names. If you want to run this workflow, you have to install astrotaverna plugin. You can easyly cusomize the workflow to provide a votable or fits table as input.

Created: 2012-05-28 | Last updated: 2012-05-28

Credits: Julian Garrido