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Showing 45 results. Use the filters on the left and the search box below to refine the results.
Bioclipse Scripting Language
Uploader
Avatar Se Samuel Lampa

Workflow NMR Shift Dereplication benchmark in Pelle... (1)

No description

Created: 2010-05-14 | Last updated: 2010-05-14

Credits: User Samuel Lampa

Bioclipse Scripting Language
Uploader
Avatar Se Samuel Lampa

Workflow NMR Shift Dereplication benchmark in SWI-P... (1)

No description

Created: 2010-05-14 | Last updated: 2010-05-14

Credits: User Samuel Lampa

Bioclipse Scripting Language
Uploader
Avatar Se Samuel Lampa

Workflow NMR Shift Dereplication benchmark in SWI-P... (1)

No description

Created: 2010-05-14 | Last updated: 2010-05-14

Credits: User Samuel Lampa

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Downloads all Bioclipse Scripting Language... (1)

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 Downloads all Bioclipse Scripting Language scripts uploaded to MyExperiment into the Bioclipse workspace, and opens them in JavaScript editors.

Created: 2010-06-23 | Last updated: 2010-06-23

Credits: User Egon Willighagen

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Resolve an InChIKey on ChemSpider (1)

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 Resolves an InChIKey on ChemSpider and opens the search results in a molecules table.

Created: 2010-06-23 | Last updated: 2010-06-23

Credits: User Egon Willighagen

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Map a Entrez Gene ID to a Gene Ontology ID (1)

 BSL Groovy script that uses BridgeDB to convert a Entrez Gene identifier into a Gene ontology identifier.

Created: 2012-01-07

Credits: User Egon Willighagen

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Find isotopes with a certain exact match (1)

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This script lists all isotopes matching a certain exact mass (given a certain error) and outputs the symbol, atomic number, and exact match of the search hits.

Created: 2013-07-30 | Last updated: 2013-07-31

Credits: User Egon Willighagen

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Extracts metabolites from a GPML pathway d... (1)

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This Groovy scripts starts with a WikiPathways identifier, downloads the GPML, and uses the Groovy XmlParser to extract metabolites for which it reports the label, and if available, database and identifier.

Created: 2013-08-11 | Last updated: 2013-08-11

Credits: User Egon Willighagen

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Groovy script to convert (part of) CGN dat... (1)

Converts CGN data from [0] to RDF. It uses intermedia TSV files (never mind the file extensions) for the data tab. The 3char ISO country codes are available at [1], but ideally these are pulled out of Wikidata directly. The RDF uses the Darwin Core ontology, QUDT, and Wikidata (on top of regular stuff). This Groovy script uses Bioclipse (www.bioclipse.net) with the RDF plugin.Menting, Frank (2015): CGN tomato passport data. figshare. http://dx.doi.org/10.608...

Created: 2015-01-22

Credits: User Egon Willighagen

Bioclipse Scripting Language
Uploader
4506?size=60x60 Nl Egon Willighagen

Workflow Example SPARQL on Wikidata using the Linke... (1)

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This Bioclipse script (in Groovy) uses the Linked Data Fragments (ldf) manager that uses the LDF Java client library to run a SPARQL query on the LDF server wrapping Wikidata.

Created: 2015-01-23 | Last updated: 2015-01-23

Credits: User Egon Willighagen

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