Workflows

InChi key to ChemSpider identifier (1)

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Returns Converts an InChIKey to a ChemSpider ID

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: Peter Li

Generate InChi key (1)

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Generates an inchi key for a given compound using the inchi web service provided by ChemSpider

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: Peter Li

Generate inChi information (1)

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Uses the GenerateInchiInfo web service operation from ChemSpider to generate information relating to the InChi string for a given chemical compound

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: Peter Li

Generate inChi (1)

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Generates an inChi string for a given chemical represented by its SMILES string, SDF or MOL file using the inchi web service provided by ChemSpider

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: Peter Li

EBI_InterProScan for Taverna 2 (1)

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the s...

Created: 2010-07-08 | Last updated: 2010-07-08

Credits: Benb

EBI_InterProScan for Taverna 2 (1)

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the s...

Created: 2010-07-08 | Last updated: 2010-07-08

Credits: Benb

Who is Dr Labrie according to Pubmed publi... (2)

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To use this wokflow you need to import services from To use this wokflow you need to import services from http://proxy.bio2rdf.org/bio2rdf/services.txt you can explore the loaded data at http://proxy.bio2rdf.org/fct

Created: 2010-07-08 | Last updated: 2010-07-08

Credits: Francois Belleau

AlitoraKDAInputModule test workflow (1)

 This workflow calls the AlitoraKDAInputModule service from the test GenePattern server.

Created: 2010-07-07 | Last updated: 2010-07-07

Credits: Peter Li

Pivoting with Consideration of Example Wei... (1)

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This process shows how the Pivoting operator can also consider example weights encoded by a special attribute with the role 'weight'. The first operators only create a demo data set for this purpose, the actual pivoting is performed by the last operator only. I recommend to place a breakpoint before the Pivoting and check the data (structure) in order to see how the Pivoting handles the weights.

Created: 2010-07-07

CTF - MEG Event Averager (1)

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This workflow applies parametrs in a user-specified processing.cfg file to a set of MEG data files. The datasets must be in CTF-format, such as those produced by Omega275 systems. The processing.cfg file and datasets are selected at the initialization of the workflow.  processing.cfg can be created by the data inspection tool DataEditor, and contains desired filter settings etc. This file can also be edited easily with a text editor to tweak settings. The workflow identifies all the trig...

Created: 2010-07-06 | Last updated: 2010-07-06

Credits: Lakelander