Workflows

Converting from heliocentric coordinate sy... (1)

• Download

Converting from heliocentric coordinate system with coordinates in arcsec to coordinates in longitude latitude Based on the IDL script xy2lonlat.pro http://hesperia.gsfc.nasa.gov/ssw/gen/idl/solar/xy2lonlat.pro Stonyhurst Heliographic Coordinate System to Helioprojective-Cartesian Coordinate System

Created: 2011-02-18 | Last updated: 2011-02-18

Credits: Anja Le Blanc

Reaction Enumeration (1)

• Download

This workflow performs a reaction enumeration. Therefore it loads a generic reaction rxn file and two educt lists. The SD files contain the educt lists for the enumeration. The products of the enumerated reaction are stored as RXN files and also a PDF will be created which visualizes the resulting reactions.

Created: 2011-02-18 | Last updated: 2011-07-21

QSAR Descriptor Calculation Workflow (2)

• Download

This workflow calculates QSAR properties and saves them as a CSV file. The molecules are read iteratively from a SD file. Additionally it writes out the molecules with unknown atom types, salt counter ions, curated molecule library with UUIDs and the used calculation time of every QSAR descriptor as a CSV file.Furthermore explicit hydrogens are added and a Hueckel aromaticity detection is performed.

Created: 2011-02-18 | Last updated: 2011-07-21

StRAnGER Web Service Workflow (1)

• Download

 StRAnGER is a web-based application, which performs functional analysis of high-throughput genomic datasets, starting from a list of significant genes derived from statistical and empirical thresholds, by utilizing the GO database and the KEGG pathway database as well as established statistical methods in order to relate the identified significant genes with important nodes in the GO tree structure or map those genes to over-represented metabolic pathways.

Created: 2011-02-15 | Last updated: 2011-02-15

Credits: Elico stranger

Calculate Sun data from date (2)

• Download

caluculates B0 (radians), position angle and sun radius (arcsec) B0 - heliographic latitude of the centre of disk position angle - of the north end of the axis of rotation, measured +ve if east of the north point of the disk radius - the apparent radus of the Sun in arcsec This is created using the calculations from the IDL routine get_sun.pro

Created: 2011-02-15 | Last updated: 2011-03-02

Credits: Anja Le Blanc

Associate hessi flares with active regions (3)

• Download

This workflow is querying the HFC ActiveRegions list and HEC hessi_flare list. It requires a time periode and a search radius arround the centre of an Active Region as inputs It produces two outputs: HFCout is a modified VOTable where a field is added with the number of associated hessi flares. combined_output is a 2 dimensional list with an VOTable for each Active region and one with an VOTable for all associated flares for that Active Region.

Created: 2011-02-11 | Last updated: 2011-10-24

Credits: Anja Le Blanc

Pathway and Gene to Pubmed (2)

• Download

This workflow takes in a list of gene names and KEGG pathway descriptions, and searches the PubMed database for corresponding articles. Any matches to the genes are then retrieved (abstracts only). These abstracts are then used to calculate a cosine vector space between two sets of corpora (gene and phenotype, or pathway and phenotype). The workflow counts the number of articles in the pubmed database in which each term occurs, and identifies the total number of articles in the entire PubMe...

Created: 2011-02-10 | Last updated: 2011-02-18

Credits: Paul Fisher

Attributions: Cosine vector space Extract Scientific Terms Rank Phenotype Terms Cosine vector space Rank Phenotype Terms Pathway to Pubmed Extract Scientific Terms Gene to Pubmed

Testing Rapidminer interface (1)

• Download

<table><tr><td><p>This process starts with loading the data. After finishing the input operator a typical learning step is performed. Here, an implementation of a decision tree learner is used which also can handle numerical values (similar to the well known C4.5 algorithm).</p></td><td><icon>groups/24/learner</icon></td></tr></table><p>Each operator may demand some input and delivers some output. These in- and outp...

Created: 2011-02-08

Gene to Pubmed (4)

• Download

This workflow takes in a list of gene names and searches the PubMed database for corresponding articles. Any matches to the genes are then retrieved (abstracts only). These abstracts are then returned to the user.

Created: 2011-02-08 | Last updated: 2011-02-10

Credits: Paul Fisher

Attributions: Cosine vector space Extract Scientific Terms Rank Phenotype Terms Cosine vector space Rank Phenotype Terms Pathway to Pubmed Extract Scientific Terms

gene and voice on the complete text (1)

• Download

Created: 2011-02-05 | Last updated: 2011-02-05

Credits: Shivamuniraj0