Workflows

Associate SEP events at Earth with flare, ... (1)

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This is the implementation of a use case worked on during CDAW3 of the HELIO project. SEP events propagated backward from Earth to the Sun. We allow for +- 30 min around the predicted time to search for flare events. The timing of the flare event informs the search time for Type III radio event (time_start to time_peak) and for the CME event (time_start to time_start+1h). Results are presented in a mulitlayered VOTable.

Created: 2012-03-13 | Last updated: 2012-03-13

Credits: Anja Le Blanc Rositsa

Attributions: Propagation of the Solar Energetic Particles to the Sun Extract content of columns from VOTables

BayesAss+ estiamtion of populations migrat... (1)

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BayesAss+ is a program that estimates recent migration rates between populations using MCMC. It also estimates each individual’s immigrant ancestry, the generation in which immigration occurred (i.e. the individual can be assigned as an immigrant from a specific population, a non-immigrant, or the offspring of an immigrant and a non-immigrant), the population (as opposed to the sample) allele frequencies, inbreeding (F) values within each population, and genotypes at any locus wit...

Created: 2012-03-08

Credits: Pipeline

Fdist2 Simulation Pipeline Workflow (1)

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Fdist2 is a simulation program to detect loci that might be under selection in samples from structured populations.   Workflow Usage & Specifications The workflow reads an input file "fdist_params2.dat", which consists of 6 lines. This file must only contain numbers in the format described: Total number of demes (100 max). No of populations sampled (must be less than or equal to total number of demes). Expected Fst for infinite allele, infinite island model. Sample si...

Created: 2012-03-08 | Last updated: 2012-03-08

Credits: Pipeline

Migrate Pipeline Workflow (1)

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Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. Migrate uses maximum likelihood or Bayesian inference to jointly estimate all parameters.     Workflow Usage & Specifications Migrate can use the following data types: •Sequence data using Felsenstein's 84 model with or without site rate variation, •Single nucleotide poly...

Created: 2012-03-08

Credits: Pipeline

Get Pathway-Genes by Entrez gene id (4)

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Given a specific entrez gene id, returns the pathways that this gene participates in and for each of those pathways which genes are associated with. The workflow outputs also a KEGG pathway map and the objects are colored according to the input color values.

Created: 2012-03-08 | Last updated: 2012-04-14

Credits: Eleni

VAMDC Query to Two Nodes using HTML Consum... (2)

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Workflow to two TAP-XSAMS Node and see results in a HTML view using a Consumer Service. This workflow queries the BaseCol and CDMS Node for MoleculeStoichiometricForumua of 'CO' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide **NOTE an update to the plugin will need to be released later to handle prefixes on certain query nodes and their restrictables. For instance BaseCol expects 'Target.MoleculeStoichiometricFormula' instead of just 'MoleculeSto...

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

VAMDC SpectCol tool using Full VAMDC-Tap Q... (2)

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Runs the SpectCol tool bundled with the plugin and can handle a list of URLS. This version asks for the full vamdc URL. SpectCol information: SPECTCOL is a tool that implements VAMDC standards, r etrieve relevant information from different databases such as CDMS, HITRAN, BASECOL, and can upload local files. All transfer of data between the client and the databases use the VAMDC-XSAMS schema. The spectroscopic and collisional information is combined and useful outputs (ascii or xsams) are ...

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow

VAMDC Query to Two Nodes using HTML Consum... (2)

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Workflow to two TAP-XSAMS Node and see results in a HTML view using a Consumer Service. This workflow queries the Hitran and CDMS Node for MoleculeStoichiometricForumua of 'CO' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

VAMDC to query on ChemicalName 'OR' Stoich... (4)

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Workflow to query just one TAP-XSAMS Node. This workflow queries the Hitran Node for MoleculeChemicalName of 'HF' and StoichimetricFormula of 'HV' Demonstrates building a query for two Restrictables. VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

Workflow to Query TAP-XSAMS node. (3)

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Workflow to just one TAP-XSAMS Node. This workflow queries the Hitran Node for MoleculeChemicalName of 'HF' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow