Workflows

Evaluate MrBayes Run on convergence, model... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2014-07-04

Credits: Saverio Vicario

Stages vectors plots, Survival and Growth ... (2)

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The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices: - Survival values calculations per stage per year and its respective plot; - Growth rates (lambda) calculations per year and its respective plot; - Stage Vectors calculations and their respective plots. ====================================================== This workflow requires an instance of Rserve on localhost This workflow has been creat...

Created: 2014-07-02 | Last updated: 2014-08-29

Credits: Maria Paula Balcazar-Vargas Mikolaj Krzyzanowski Jon Giddy Gerard Oostermeijer

Damping ratio (2)

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The Damping ratio Workflow provides an environment to calculate the damping ratio of several matrices and plot them. The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges. ============================================================= This workflow requires an instance of Rse...

Created: 2014-06-25 | Last updated: 2014-07-25

Credits: Maria Paula Balcazar-Vargas Mikolaj Krzyzanowski Jon Giddy Gerard Oostermeijer

Parametric Bootstrap or Resample a project... (3)

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The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and fertility matrices. Dead fates are added to the transition matrix and the columns are then sampled from a Multinomial dis...

Created: 2014-06-18 | Last updated: 2014-07-25

Credits: Maria Paula Balcazar-Vargas Jon Giddy Gerard Oostermeijer

Attributions: Matrix Population Model analysis v12