Workflows

POSTing CSV file to RapidAnalytics Web ser... (1)

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This is the first demo used in the RapidAnalytics video on creating Web services. It downloads three data sets provided by data.gov.uk and generates a regression model and stores it as "RegressionTree" in the repository.

Created: 2011-11-02

Ice Class Map pixel analysis (NERSC) (1)

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NERSC ice classification workflow. Avaible images for a specific date will be fecthed from the WPS service, and their color table changed to allow for a user to easly identify specific areas. Statistical analysis also run using the r.stats module. Worflow uses a list of image, the list will flow thru the workflow for process resulting in mutiple outputs

Created: 2011-11-02 | Last updated: 2011-11-02

Credits: Jorgejesus

date filter for ice Class Map service (NERSC) (1)

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Workflow to filter available dates with ice classification images. Service provided by NERCS. Dates are filtered using a simple regular expression

Created: 2011-11-02 | Last updated: 2011-11-04

Credits: Jorgejesus

r.stats workflow for pixel statistics (1)

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r.stats operation for image. Output will group pixels by: DN, total area, relative %. This worflow is used inside the ice Class exampel as a nested workflow

Created: 2011-11-02 | Last updated: 2011-11-02

Credits: Jorgejesus

KNN-FeatureSelection-INCAE (1)

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This process adapts one of the templates available in RapidMiner 5 to include some preprocessing.

Created: 2011-10-28

BLASTP with simplified results returned (1)

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.

Created: 2011-10-25 | Last updated: 2011-10-25

Credits: Halima alshabani

Get homologous from an NCBI homoloGene.dat... (1)

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Get homologous from NCBI homoloGene for a lsit of UniProt protein accession. This workflow is useful if you have a long list of protein accessions. Use PICR to convert UniProt to RefSeq, get homologous from homoloGene and convert RefSeq results to UniProt. Be patient, the workflows has to bring a file around 11Mb. ftp://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/README

Created: 2011-10-20 | Last updated: 2011-10-27

Credits: Rafael C. Jimenez

De-normalizing Dataset After K-means (1)

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K-means is performed on the iris dataset. After finding the clusters, the dataset is de-normalized and the means of the different variables are calculated by cluster.

Created: 2011-10-19 | Last updated: 2011-10-19

Revisión Sistemática de Software (4)

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 Workflow for sistematic software revision.

Created: 2011-10-18 | Last updated: 2011-12-12

Credits: E3matheus

KEGG pathway to proteins (2)

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Get various information about the proteins in a KEGG pathway. Demonstrates integrating SADI services with non-SADI services.

Created: 2011-10-17 | Last updated: 2011-10-18

Get homologous from NCBI homoloGene using ... (1)

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Get homologous from NCBI homoloGene for a lsit of UniProt protein accession. Use PICR to convert UniProt to RefSeq, get homologous from homoloGene and convert RefSeq results to UniProt. Be patient, the workflows has to bring a file around 11Mb. ftp://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/README

Created: 2011-10-14 | Last updated: 2011-10-27

Credits: Rafael C. Jimenez

Get homologous from NCBI homoloGene using ... (1)

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Get homologous from NCBI homoloGene for one UniProt protein accession. Use PICR to convert UniProt to RefSeq, get homologous from homoloGene and convert RefSeq results to UniProt. Be patient, the workflows has to bring a file around 11Mb. ftp://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/README

Created: 2011-10-14 | Last updated: 2011-10-14

Credits: Rafael C. Jimenez

Find orthologs using a uniprot accession (1)

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Find orthologs based on ensembl information using as input/output uniprot accession

Created: 2011-10-14 | Last updated: 2011-10-14

Credits: Rafael C. Jimenez

Get homologous from NCBI homoloGene (1)

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Get homologous from NCBI homoloGene for a list of Refseq protein accessions. Be patient, the workflows has to bring a file around 11Mb. ftp://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/README

Created: 2011-10-13 | Last updated: 2011-10-13

Credits: Rafael C. Jimenez

WPS-GRASS-Bridge r.los example (1)

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r.los generates a raster output map in which the cells that are visible from a user-specified observer position are marked with the vertical angle (in degrees) required to see those cells (viewshed). A value of 0 is directly below the specified viewing position, 90 is due horizontal, and 180 is directly above the observer. The angle to the cell containing the viewing position is undefined and set to 180. http://grass.fbk.eu/grass62/manuals/html62_user/r.los.html

Created: 2011-10-13

Credits: Jorgejesus

Spreadsheet Import - Fertilizer Use (1)

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This workflow takes data from a spreadsheet and creates a graph of fertilizer use in NY state from 1960-1965.

Created: 2011-10-09 | Last updated: 2011-10-09

Credits: Atminer

Attributions: Spreadsheet Import Example

Broccoli Production New York State, 1960-1965 (1)

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This workflow takes data about agricultural production in New Jersey and New York from 1960 -1965, to compare productivity in broccoli growing.

Created: 2011-10-09 | Last updated: 2011-10-09

Credits: Atminer Alan Williams

Attributions: Spreadsheet Import Example

Population Plot with R (1)

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This script pulls the population of every country and creates a plot of them. This is based on the script at http://www.myexperiment.org/workflows/1728.html , with a few modifications for labelling axes and the title.

Created: 2011-10-08

Credits: Atminer

Average and Standard Deviation (1)

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This workflow takes in a list of values and a list name, and returns the list name, average, and standard deviation of the values.

Created: 2011-10-07 | Last updated: 2011-10-07

Credits: Atminer

Simple Python example (1)

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This workflow generates a random number within the range 0 to 100. The generation is done by a python script. The workflow assumes that python is in the path.

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Alan Williams