Workflows

Temporal Expression Extraction (1)

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This experiment evaluates a method of extracting temporal expressions from documents. It uses the WikiWars-corpus, a time-annotated corpus of descriptions of the course of wars and conflicts. An evaluation component compares the experimently identified expressions with the pre-annotated expressions of the corpus and calculates precision, recall and  f-score.

Created: 2012-05-22 | Last updated: 2012-05-22

Credits: AGeduldig

Watershed (2)

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Local machine example

Created: 2012-05-21 | Last updated: 2012-05-21

Credits: Jorgejesus

Mp3ToWav Mig+QA (2)

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Migrates Mp3 files from input List to Wav files and performs QA. The QA steps include File Format Validation, Significant Property Comparison and migrationQA file content comparison (all CLI). This workflow matches solution SO4 on the SCAPE opf wiki, see http://wiki.opf-labs.org/display/SP/SO4+Audio+mp3+to+wav+Migration+and+QA+Workflow

Created: 2012-05-21 | Last updated: 2013-04-24

Credits: Bolette Jurik

CHEMOPREVENTION WORKFLOW2 WITH DATA (1)

 CHEMOPREVENTION WORKFLOW WITH DATA

Created: 2012-05-19 | Last updated: 2012-05-19

Credits: Kleo Achilleos

CHEMOPREVENTION WORKFLOW1 (1)

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 CHEMOPREVENSION WORKFLOW NO DATA INCLUDED

Created: 2012-05-19 | Last updated: 2016-04-30

Credits: Kleo Achilleos

Hybrid recommendation system (1)

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This is one hybrid recommendation system combining linear regression recommender, created using RapidMiner core operators, and Recommender extension multiple collaborative filtering and attribute based operators.

Created: 2012-05-17

Credits: Matej Mihelčić Matko Bošnjak

Online update recommendation web service (1)

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 After some arbitrary number of recommendations to specific users, system has to update recommendations in \textit{item recommendation table}. This is accomplished by calling the online update recommendation web service, which updates the recommendation model in RapidAnalytics repository and updates the recommendations for specific users in \textit{item recommendation table}.

Created: 2012-05-11 | Last updated: 2012-05-11

Write activity web service (1)

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 When the specific user $i$ "consumes" certain item $j$ the write activity web service is called, which writes activity $(i,j)$ to \textit{train set table} and removes recommendation $j$ for user $i$ from \textit{item recommendation table} in SQL database.

Created: 2012-05-11 | Last updated: 2012-05-11

Execution time measurement for Rapidminer ... (1)

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This is a workflow that measures execution times of various RapidMiner operators on random polynomial classification datasets of various sizes in the range of 4 to 2000 examples and attributes.

Created: 2012-05-11 | Last updated: 2012-05-11

Front-end Recommendation Web Service (1)

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 Front-end recommendation web service has a simple job to query the cached recommendations from the \textit{item recommendation table}

Created: 2012-05-11 | Last updated: 2012-05-11

Calibration for execution time extension (1)

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 Benchmark workflow that loops Naive Bayes operator many times and provides estimate of the system's overall performance.

Created: 2012-05-10 | Last updated: 2012-05-10

Extract DEC and RA from whitespace separat... (2)

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This workflow extracts DEC and RA coordinates from a whitespace seperated file and this is a silly description.

Created: 2012-05-10 | Last updated: 2012-09-24

Credits: Stian Soiland-Reyes

Simple Recommender System Web Service (1)

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 This workflow takes macro value of user request and computes top-n recommendations from already learned model on train set. Macro value is transformed to example set with the appropriate \textit{user identification} role within \textit{ProcessInput} subprocess operator.   Simple recommendation web service workflow takes three inputs: \begin{enumerate} \item Macro value \textit{user} - identification number of user request \item Train set from RM repository \item Learned Mo...

Created: 2012-05-10 | Last updated: 2012-05-10

Simple image migration (1)

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Then starts a migration action on an image and extracts properties from the original and migrated image. The properties are compared and a QA algorithms is started on the image data itself .

Created: 2012-05-08 | Last updated: 2012-05-08

Credits: Markus Plangg

Find workflow ancestors (2)

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Given a t2flow file (Taverna 2 workflow), extract ancestor workflow UUIDs and search myExperiment for matching workflow entries. Note that this will also match the workflow itself and nested workflows, but does not match against other workflows having the same ancestors (but newer UUIDs).

Created: 2012-05-08 | Last updated: 2012-07-09

Credits: Stian Soiland-Reyes

Check Java Cryptography Unlimited Strength (1)

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Checks if Java Cryptography Extension (JCE) Unlimited Strength Jurisdiction Policy Files is installed, and redirects user to correct download page and relevant lib/security folder if not.

Created: 2012-05-08 | Last updated: 2012-05-08

Credits: Stian Soiland-Reyes

Attributions: Find/show Taverna's home directory

extractGInumber (1)

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 This workflow uses regex pattern to compare the identity percentage of each hits against the input sequnece and return the whole information of the hits and the GI number of them (if they including the GI number as a sub information)   inputfileURL:  the location of the Gi number   outputText  : the list of all the hits and the GI number of them

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants

filterDifferenceInLists (1)

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 This workflow output a list of the protein or any string hits in the first list but not in the second list.    output : output file location com : comparision protein list our : interested protein list out1: output as a string

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants

ConcatStringTogether (1)

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 This workflow is as simple as you can imagine! It can be used to remove the information tags in a fasta file and concat the sequence together   fastaURL :  the input fasta reads file location seqURL : the outcome sequence file location wholeSeq : the output sequence as an entire string

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants

generateWholeSeqAnnotation (1)

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 This work flow is used for genereating all the known genes together to annotate a whole or a large region of genome sequence.   outputfilrURL:  the location of the output file Ginumber:   the input gi gene number wholeGenomeSeq:    the whold sequence annotation information output:    the output of genbank text

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants