Workflows

Example for external tools with zip and unzip (1)

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This workflow only works on a Unix machine. This workflow takes a fixed URL from which a text file is downloaded (output as Original_file). That file is zipped (output as Zipped_File) and then unzipped again (output as Unzipped_File). The orginal file and the unzipped version are then diff'd/

Created: 2014-04-03

Credits: Alex Nenadic

EBI_InterproScan_NewServices (2)

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

Created: 2014-04-03 | Last updated: 2014-04-09

Credits: Alex Nenadic

Demonstration of configurable iteration (2)

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This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Created: 2014-04-03 | Last updated: 2014-07-09

Credits: Alex Nenadic

Photohawk SSIM tiff/png/jpeg (4)

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SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk SSIM.

Created: 2014-04-01 | Last updated: 2014-10-30

calculateFieldline by SINP (5)

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Workflow for Taverna based on the IMPEx-FP7 method calculateFieldLine. This method can be used to return the field lines (calculated by SINP PMM), which start in given points inside the planetary magnetosphere and in different time moments for each point, and the magnetic field along these lines.

Created: 2014-03-31 | Last updated: 2014-05-19

calculateDataPointValue by SINP (3)

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Workflow for Taverna based on the IMPEx-FP7 method calculateDataPointValue. This method can be used to return the magnetic field (calculated by SINP PMM) in given points inside the planetary magnetosphere and in different time moments for each point.

Created: 2014-03-31 | Last updated: 2014-05-19

getMostRelevantRun by FMI (3)

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Workflow for Taverna based on the IMPEx-FP7 method getMostRelevantRun. This method is intended to help users to find those simulation runs in SMDB's tree.xml file whose input parameters best match the given solar wind conditions. For each simulation run in the tree.xml file the method computes a 'difference index'. This 'difference index' is a sum of individual difference indices (one for each solar wind parameter defined in the input parameter set).

Created: 2014-03-31 | Last updated: 2014-05-19

getFileUrl by LATMOS (5)

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Workflow for Taverna based on the IMPEx-FP7 method getFileURL. This method fetches precomputed data, i.e. already calculated values along a given spacecraft trajectory.

Created: 2014-03-31 | Last updated: 2014-05-19

getFieldline by LATMOS (3)

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Workflow for Taverna based on the IMPEx-FP7 method getFieldLine. This method computes field lines or stream lines inside the simulation box. The user will provide a set of 3D position coordinates which act as starting points for the field/stream line tracing. The tracing may be performed forwards, backwards or both. The method will return an URL to a VOTable file which contains the field/stream lines as a set of 3D position coordinates and the requested physical quantities at these points.

Created: 2014-03-31 | Last updated: 2014-05-20

getFieldline by FMI (3)

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Workflow for Taverna based on the IMPEx-FP7 method getFieldLine. This method computes field lines or stream lines inside the simulation box. The user will provide a set of 3D position coordinates which act as starting points for the field/stream line tracing. The tracing may be performed forwards, backwards or both. The method will return an URL to a VOTable file which contains the field/stream lines as a set of 3D position coordinates and the requested physical quantities at these points.

Created: 2014-03-31 | Last updated: 2014-05-19

getDataPointValue_Spacecraft by LATMOS (4)

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Workflow for Taverna based on the IMPEx-FP7 method getDataPointValue_Spacecraft. This method is used to compute values of various physical quantities (e.g. density, magnetic field strength etc.) along the path of a given spacecraft.

Created: 2014-03-31 | Last updated: 2014-05-19

getDataPointValue_Spacecraft by FMI (3)

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Workflow for Taverna based on the IMPEx-FP7 method getDataPointValue_Spacecraft. This method is used to compute values of various physical quantities (e.g. density, magnetic field strength etc.) along the path of a given spacecraft.

Created: 2014-03-31 | Last updated: 2014-05-20

getDataPointValue by LATMOS (5)

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Workflow for Taverna based on the IMPEx-FP7 method getDataPointValue. This is a generic method which can be used to return parameters for 0D, 1D, 2D, or 3D.

Created: 2014-03-31 | Last updated: 2014-05-19

getDataPointValue by FMI (3)

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Workflow for Taverna based on the IMPEx-FP7 method getDataPointValue. This method is used to compute values of various physical quantitites (e.g. density, magnetic field strengths etc.) for a given simulation run at a user given set of 3D points.

Created: 2014-03-31 | Last updated: 2014-05-19

calculateCubeMercury by SINP (3)

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Workflow for Taverna based on the IMPEx-FP7 method calculateCubeMercury. This method returns the magnetic field, calculated by SINP PMM, in grid points of a cube with chosen boundaries inside the Hermean magnetosphere with chosen sampling.

Created: 2014-03-31 | Last updated: 2014-05-19

MergePeptides (1)

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Created: 2014-03-31 | Last updated: 2014-03-31

Credits: hindlem

An iframe test (1)

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But this works

Created: 2014-03-28

Credits: Alan Williams

calculateDataPointValueMercury by SINP (6)

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Workflow for Taverna based on the IMPEx-FP7 method calculateDataPointValueMercury. This method can be used to return the magnetic field (calculated by SINP PMM) in given points inside the Hermean magnetosphere.

Created: 2014-03-28 | Last updated: 2014-05-19

Credits: Manuel Scherf

calculateDataPointValue by SINP (3)

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Workflow for Taverna based on the IMPEx-FP7 method calculateDataPointValue. This method can be used to return the magnetic field (calculated by SINP PMM) in given points inside the planetary magnetosphere and in different time moments for each point.

Created: 2014-03-28 | Last updated: 2014-05-20

calculateCube by SINP (3)

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Workflow for Taverna based on the IMPEx-FP7 method calculateCube. This calculates a 3DCube based on the paraboloid model of SINP around Earth (see http://smdc.sinp.msu.ru/index.py?nav=paraboloid/index).

Created: 2014-03-28 | Last updated: 2014-05-19