Workflows

Photohawk PAE tiff/png/jpeg-jp2 (1)

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SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk PAE.

Created: 2014-09-07

Credits: Markus Plangg

Photohawk MAE tiff/png/jpeg-jp2 (1)

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SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk MAE.

Created: 2014-09-07

Credits: Markus Plangg

Photohawk AE tiff/png/jpeg-jp2 (1)

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SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk AE.

Created: 2014-09-07

Credits: Markus Plangg

Photohawk MSE tiff/png/jpeg-jp2 (1)

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SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk MSE.

Created: 2014-09-07

Credits: Markus Plangg

Photohawk SSIM tiff/png/jpeg-jp2 (3)

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SCAPE QA Object Component. Compares tiff/png/jpeg to jp2 images using Photohawk SSIM.

Created: 2014-09-07 | Last updated: 2014-09-07

Credits: Markus Plangg

entreztoKeggImage (1)

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This workflow accepts a list of Entrez Gene IDs. It dentifies which KEGG pathway each gene is involved with and displays the pathway diagrams

Created: 2014-09-05

Credits: Katy Wolstencroft

ImportConvertEnsembl (1)

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This workflow accepts a spreadsheet file as input and extracts a list of ENSEMBL Gene IDs from column A. The hsapiens_gene_ensembl service converts these IDs to Entrez_geneIds

Created: 2014-09-05

Credits: Katy Wolstencroft

FunctionalClusterDavid (1)

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This workflow takes a list of Entrez Gene IDs as input and submits them to the DAVID REST API for functional clustering using OG annotaiton, biological pathways and disease associations. Used for analysing a set of genes (i.e. those differentially expressed for a particular disease condition).

Created: 2014-09-05

Credits: Katy Wolstencroft

Example dbfetch (2)

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Run EBI's dbfetch

Created: 2014-09-03 | Last updated: 2014-09-03

Credits: Stian Soiland-Reyes Katy Wolstencroft

Attributions:

Finding nodes in Homo sapiens pathways wit... (1)

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Groovy script to find Homo sapiens metabolites encoded as GPML <Label> with OPSIN and provide ChemSpider identifiers. The results are stored in a report file.

Created: 2014-09-01

Credits: Egon Willighagen

Attributions: Finding nodes in Anopheles gambiae pathways with IUPAC names