Workflows

Characterization Template - Proton NMR (1)

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Template for an NMR expriment and asasociated data files

Created: 2010-08-31 | Last updated: 2010-10-08

Credits: http://thebluerhino.myopenid.com/

Cross tabulation via aggregation and pivoting (1)

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Creates a contingency table using the Aggregate and Pivot operators.

Created: 2010-08-25 | Last updated: 2010-08-25

Find and replace missing values with other... (1)

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Sometimes, it is helpful to replace a numerical attribute containing a missing value with a value from another attribute in the example row rather than using a constant such as an average or maximum value. This process generates some missing values, detects them and replaces with a calculation based on the value of another attribute. (Purists will be alarmed at the mathematical impossibility of taking the square root of a negative number). The process detects missing values by subtracti...

Created: 2010-08-25 | Last updated: 2010-08-25

Create custom-made GPCR alignments (1)

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This workflow allows you to create your own GPCR alignments. The alignments are built from the residues that are annotated with the general residue numbers. Alignments are therefore not built using standard alignment algorithms but are created by selecting residues that are likely to share the same position in the three-dimensional structure. Users can select the proteins and residue positions that should be aligned, allowing for the creation of e.g. an alignment of all binding pocket residue...

Created: 2010-08-24 | Last updated: 2010-08-24

Credits: Bas Vroling

BLAST against the GPCRDB (1)

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With this workflow you can submit a BLAST query to the GPCRDB. Input requires a sequence with amino acids only.

Created: 2010-08-24 | Last updated: 2010-08-24

Credits: Bas Vroling

Retrieve a protein from the GPCRDB (1)

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This small workflow illustrates how to use the web service access provided by the GPCRDB in Taverna. The proteinId input field is case sensitive and by default the identifiers in the GPCRDB are lowercase. You can try this mini-workflow with e.a. 'adrb2_human'.

Created: 2010-08-24 | Last updated: 2010-08-24

Credits: Bas Vroling

instruments in sxr and euv spectrum (1)

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ICS use case 5

Created: 2010-08-20 | Last updated: 2010-08-20

Credits: Anja Le Blanc

For loop sample for Trident v1.2 (1)

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  Please refere following link for more information http://tridentworkflow.codeplex.com/Project/Download/FileDownload.aspx?DownloadId=138916

Created: 2010-08-19 | Last updated: 2010-08-24

Credits: Trident

Testing caBIG workflow (1)

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An example workflow to test the installation of caGrid Workflow Suite and the submission of a workflow to a caGrid workflow service.

Created: 2010-08-17 | Last updated: 2010-08-17

Credits: Wei Tan

caArray (1)

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preprocess data before it is sent to any GenePattern services.

Created: 2010-08-14 | Last updated: 2010-08-14

Credits: Wei Tan