myExperiment - Workflows

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User: Eelke van der Horst

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Taverna 2

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Eelke van der Horst

Get concept suggestions from term (1)

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This workflow suggests concept ids that match the query term. The user can run this workflow with any term of interest as for example "human", "htt", "Transcription" etc, and will get suggestions for concept ids together with descriptions. Then can choose the concept id that matches the best to her/his needs and use it to the rest of the CPA workflows.

Created: 2015-02-18

Credits: Eelke van der Horst Kristina Hettne Marco Roos Eleni

Attributions: Get concept suggestions from term

Taverna 2

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Eelke van der Horst

Fetch Abstracts (1)

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Example how to fetch abstracts using a component that performs SQL queries based on a database properties string.

Created: 2014-05-08

Taverna 2

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Eelke van der Horst

Get properties from a properties string (1)

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This workflow shows how to get specific properties from a properties string. The properties string has the format: some.key=Some value another.key=Another value

Created: 2014-05-01

Taverna 2

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Eelke van der Horst

Find pathways in which two genes co-occur ... (1)

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This workflow finds all pathways in which two gene symbols co-occur. This workflow was created as an exercise for the "Managing and Integrating Information in the Life Sciences course 2013" at the LUMC, which is organized by the Netherlands Bioinformatics Center (NBIC).