Workflows

Heatmap of read coverages (1)

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Created: 2014-04-03

Credits: Björn Grüning

Clustered heatmap of signals around the TSSs (1)

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Galaxy workflow based on deepTools which creates a clustered heatmap of signals around the TSS. One bigwig file is needed as input with the signal and an annotation file with your TSS regions. The output will be a heatmap. You can create such a bigwig file with the bamCorrelate toolFor more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03 | Last updated: 2014-04-03

Credits: Björn Grüning

MergePeptides (1)

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Created: 2014-03-31 | Last updated: 2014-03-31

Credits: hindlem

NGS : Tuto SNP detection workflow single end (1)

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Generate pileup, Unify Genotypers and create a VCF file from FastQ files of two individuals

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: Ylebras

NGS RAD : Population Genomics on RAD data ... (1)

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Analyse clean population fastQ files (coming from Stacks : Process Radtag tool for example) without a reference genome and population information

Created: 2014-03-05

NGS RAD : Population Genomics on RAD data ... (1)

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Analyse clean population SAM files (coming from alignment of FastQ from Stacks : Process Radtag tool for example) with a reference genome and population information

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Group and filter mapped reads (1)

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Filter and group reads from a mapping Bam file

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: Ylebras

Tuto Galaxy 2013 : GenOuest, from Fasta to... (1)

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Create a tree from a multifastafile using ClustalW, PhylipDNAdist, PhylipNeighbor, PhylipDrawtree and Treevector, for interactive visualization in Phyloviz or static on pdf or svg format. Then, using the same multifasta file, handling sequences file, use blast on a reference genome and filter results to have sequences with more than 90% identity.

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: Ylebras

NGS : Tuto SNP detection workflow single end (1)

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Generate pileup, Unify Genotypers and create a VCF file from FastQ files of two individuals

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: Ylebras

Transcritomics : eQTL after data extractio... (1)

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Format raw files from Feature extraction output (Agilent array matrix file) to have individual in columns and genes in rows

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: Ylebras