myExperiment - Workflows

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Type: Bioclipse Scripting Language

Tag: bioclipse

Licence: by-sa

Group: Bioclipse

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Bioclipse Scripting Language

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Egon Willighagen

Finding nodes in Anopheles gambiae pathway... (1)

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Groovy script to find Anopheles g. metabolites encoded as GPML <Label> with OPSIN and provide ChemSpider identifiers.

Created: 2014-08-24

Credits: Egon Willighagen

Attributions: Extracts metabolites from GPML pathway files downloaded from WikiPathways

Bioclipse Scripting Language

Uploader

Egon Willighagen

Extract chemical structures from a Beilste... (1)

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Uses the Oscar4 text mining tool to extract chemical structures from a Beilstein Journal of Organic Chemistry paper and visualizes them in the molecules table. Jericho is used to extract text from the paper's HTML page.

Created: 2011-05-12 | Last updated: 2011-05-12

Credits: Egon Willighagen

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