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Type: Taverna 2 Wsdl: http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl or http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl

Workflow pubmed abstracts from pathways (1)

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Extraction of the abstracts from pubmed pubblications related to the pathways involving the input genes

Created: 2014-02-28

Credits: User Massimo La Rosa User Antonino Fiannaca

Attributions: Workflow NCBI Gi to Kegg Pathway Descriptions Workflow Pathway to Pubmed

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Workflow Blast Report from ID (1)

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This workflow retrieves a fasta sequence or blast report from an id. Firstly, given some inputs (e.g. ids:EDL10223.1, format:fasta, style:default and db:emblcds), it returns the sequence in fasta format associated to those inputs using the EBI's WSDbfetch web service (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch). Next, we obtain a Blast report from this fasta sequence and some others parameters. The final result in that case corresponds with the same fasta sequence introduced...

Created: 2011-04-07 | Last updated: 2011-04-07

Credits: User Hectorj2f

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