Workflows

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Showing 180 results. Use the filters on the left and the search box below to refine the results.
Type: Taverna 2 User: Alan Williams

Workflow BiomartAndEMBOSSAnalysis (1)

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2009-12-15

Credits: User Alan Williams

Workflow A workflow version of the EMBOSS tutorial (1)

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Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

Created: 2009-12-15

Credits: User Alan Williams

Workflow Metabolite pathway search (1)

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The workflow searches for metabolomic pathways that match the entered keywords and returns information about the chosen pathway

Created: 2014-12-18

Credits: User Alan Williams

Workflow Choose_id (1)

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Make a choice based upon displayed names and return the id corresponding to the choice

Created: 2014-12-18 | Last updated: 2014-12-18

Workflow Extract columns (3)

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Extracts column data from a newline and tab separated string

Created: 2014-12-18 | Last updated: 2014-12-18

Workflow Increment an integer (1)

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This workflow uses R to increment the input integer

Created: 2014-10-03

Credits: User Alan Williams

Workflow Species chooser (1)

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In your browser, choose between marmots and horseshoe crabs

Created: 2014-10-03

Credits: User Alan Williams

Workflow Get weather information (1)

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Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure.

Created: 2014-10-03

Credits: User Alan Williams User Franck Tanoh

Attributions: Workflow Get weather information

Workflow Species Occurrence (1)

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Retrieve the first 100 occurrences of a species in Darwin format

Created: 2014-10-03

Credits: User Alan Williams

Workflow Construct viewparams (1)

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Construct the viewparams parameter to OBIS services

Created: 2014-10-02

Credits: User Alan Williams

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