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Type: Taverna 2 Tag: liquid chromatography User: Magnus Palmblad

Workflow RTCalc Retention Time Prediction and Outli... (1)

This workflow takes as input a pepXML file from PeptideProphet, applied RTCalc and outputs a filtered list of peptides based on the retention time Z-scores.

Created: 2014-02-06 | Last updated: 2014-02-06

Credits: User Magnus Palmblad User Sonja Holl

Workflow Retention Time Prediction with X!Tandem (1)

This workflow identifies peptides from tandem mass spectra using X!Tandem as in a standard installation of the Trans-Proteomic Pipeline (TPP, version 4.6, but earlier versions should also work). The peptide-spectrum matches are validates using PeptideProphet (also from a standard installation of TPP) and peptides with at least a probability 0.95 are used to train a linear retention time predictor (Palmblad et al., 2002), whereby retention coefficients are also derived. These indirectly provid...

Created: 2012-09-03 | Last updated: 2012-09-03

Credits: User Magnus Palmblad User Yassene User Eleni

Attributions: Blob rt3.c

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