Workflows

RetroPath2.0 - a retrosynthesis workflow w... (15)

• Download

The RetroPath2.0 workflow build a reaction network from a set of source compounds to a set of sink compounds.When applied in a retrosynthetic fashion, the source is composed of the target compounds and the sink is composed of the available reactants (for instance in the context of metabolic engineering the sink is the set of native metabolites of a chassis strain). From amongst all the chemical reactions generated using RetroPath2.0 (in the retrosynthetic way), only a subset may effectively l...

Created: 2017-05-24 | Last updated: 2022-02-24

Credits: Thomas Duigou Baudoin Delépine BioRetroSynth

get_compounds_by_reaction (1)

• Download

Retrieve all compounds which have a link to a given reaction_id Example on input: rn:R00100

Created: 2008-10-07

Credits: Franck Tanoh

KNIME Workflow for RetroRules and Selenzyme (4)

• Download

Created: 2018-07-24 | Last updated: 2018-08-11

Credits: Pablo Carbonell

Find Reactome pathways and reactions by GO (1)

• Download

Find Reactome pathways and reactions (names and accessions) in Human querying by a Gene Ontology term. This is an example of how to use the Reactome Biomart service in Taverna. Many other possibilities are possible by modifying the filters and attributes options of the service.

Created: 2011-05-29 | Last updated: 2011-05-29

Credits: Rafael C. Jimenez

Workflow for Selenzyme v 1.0 (2)

• Download

No description

Created: 2017-08-18 | Last updated: 2017-09-08

Credits: Pablo Carbonell