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Tag: protein interaction Licence: by-sa

Workflow Bio2RDF: CPath search, rdfise and load dem... (1)

Search for a list of genes into the Pathway Commons interaction database and load the fetched triples into a triplestore. INSERT IN GRAPH < http://localhost/sesame/mem_rdf_db> {     CONSTRUCT{ ?s, ?p, ?o . }     FROM <>     WHERE {         SELECT ?s         FROM <>  ...

Created: 2009-02-19 | Last updated: 2009-02-19

Credits: User Francois Belleau

Workflow UniProt Protein Protein Network (1)

This workflow uses the Europe PMC Web Services searchPublications and getDatabaseLinks to reconstruct a protein-protein network based on co-occurence in the scientific literature, arbitrary filtered by a PubMed query, e.g. the word "complex" appearing in the title or abstract. The workflow also looks up the second degree connections, i.e. proteins co-occuring with proteins co-occuring with the protein given as input, but not with this protein itself. The output is a (1) Pajek graph file, a GM...

Created: 2015-12-04

Credits: User Magnus Palmblad User Yassene

Workflow ELM Database Retrieval Workflow (1)

This workflow retrieves all the current entries stored in the Eukaryotic Linear Motif (ELM) Database and returns all entries in a collated readable format. This requires the ELM Database retrieval WSDL file:

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: User Kieren Lythgow

Workflow Molecular Interactions from IntAct PSICQUI... (2)

Get molecular interaction data in psi-mitab25 from IntAct through its REST PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:KHDRBS1".

Created: 2011-05-29 | Last updated: 2011-10-05

Credits: User Rafael C. Jimenez

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