Workflows

Search filter terms
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by wsdl
Results per page:
Sort by:
Showing 4 results. Use the filters on the left and the search box below to refine the results.
Tag: bioinformatics Wsdl: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl

Workflow Sequence_or_ID_or_GI (1)

Thumb
Get a sequence in fasta format given one of: An NCBI GI number (e.g. 75251068). An entry identifier in database:identifier format (e.g. uniprot:Q96247). 3. A sequence entry in a format supported by EMBOSS seqret.

Created: 2008-06-07

Credits: User Hamish McWilliam

Attributions: Workflow Structure_or_ID

Workflow tRNAscan (1)

Thumb
Search a nucleotide sequence for tRNA genes using the tRNAscan-SE tool (see http://wiki.bioinformatics.org/TRNAscan-SE). This workflow uses the tRNAscan service at VBI PathPort (see http://pathport.vbi.vt.edu/services/#predict_7).

Created: 2008-06-28

Credits: User Hamish McWilliam

Attributions: Workflow Sequence_or_ID_or_GI

Workflow NCBI_QBLAST (2)

Thumb
Perform an NCBI BLAST sequence similarity search using NCBI's QBLAST service (see http://www.ncbi.nlm.nih.gov/BLAST/Doc/urlapi.html). The query sequence, database to search and BLAST program to use are inputs, the other parameters for the search are allowed to default.

Created: 2008-06-07 | Last updated: 2008-06-07

Credits: User Hamish McWilliam

Workflow Search InChI in NCBI eSearch (pccompound) (1)

Thumb
This workflow takes in a search term (e.g. InChI) for search in PubChem pccompound database. The result is an xml file containing summary information about the search term and also a compound image and the compound webpage fetched from Pubchem.

Created: 2009-03-30 | Last updated: 2009-03-30

Credits: User Michael Gerlich

Results per page:
Sort by: