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Integrated Mapping and Assembly with Quali... (1)
This workflow contains the first step of a genomics data analysis protocol designed and implemented by Federica Torri, Fabio Macciardi and Ivo Dinov to process large number of sequence data outputted by the Illumina sequencing pipeline. See Step II analysis (GATK/QC/Cleaning) here.
This protocol is implemented using the LONI Pipeline environment and includes the following types of computational resources:
Mapping and Assembly with Qualities (MAQ)
Sequence Alignment and Mapping t...
Created: 2011-04-05 | Last updated: 2011-04-05
Credits: Pipeline
mrFAST Indexing and Mapping (1)
This page contains a number of bioinformatics workflows based on the mrFAST sequence analysis package. This page describes Pipeline bioinformatics modules from the mrFAST suite.
mrFAST (micro-read Fast Alignment Search Tool) is mapper designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 6 bp. This manu...
Created: 2011-04-05 | Last updated: 2011-04-05
Credits: Pipeline