Workflows

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Tag: conversion

Workflow ImportConvertEnsembl (1)

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This workflow accepts a spreadsheet file as input and extracts a list of ENSEMBL Gene IDs from column A. The hsapiens_gene_ensembl service converts these IDs to Entrez_geneIds

Created: 2014-09-05

Credits: User Katy Wolstencroft

Workflow Slim Migrate And QA mp3 to Wav Using Hadoo... (4)

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This workflow migrates an input list (available on HDFS) of mp3 files (available on NFS) to wav files (in output directory on NFS) using an ffmpeg Hadoop job. The workflow then compares content of the original mp3 and the migrated wav by first converting the two files to wav using an mpg123 Hadoop job and the identity function respectively, and then using an xcorrSound waveform-compare Hadoop job. The needed Hadoop jobs are available from https://github.com/statsbiblioteket/scape-audio-qa-ex...

Created: 2014-02-21 | Last updated: 2014-06-30

Workflow CSV to VOTable importer (2)

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This module provides a VOTable representation of the CSV file being pointed by the csv_file_path, either as a POSIX local file path, or a URL.

Created: 2013-07-29 | Last updated: 2013-07-29

Credits: User Juandesant Network-member AMIGA Network-member Wf4Ever

Workflow Sequence Format Conversion (1)

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Demonstrate the use of the format conversion tool. Converts a DNA sequence in fasta format into plain, genbank, and phylip formats.

Created: 2011-06-28 | Last updated: 2011-06-28

Credits: User Carol Lushbough

Workflow Sff2Fasta_Blast_Blat_ParseBlast (1)

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Blast and Blat Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blat sequences against a database Blast sequences against a database Parse Blast results http://www.bioinformaticslaboratory.nl/  

Created: 2010-09-22 | Last updated: 2010-09-22

Credits: User Barbera van Schaik User Antoine van Kampen User Angela Luijf User Silvia Olabarriaga

Workflow Sff2Fasta_Blat (1)

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Blat Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blat sequences against a database http://www.bioinformaticslaboratory.nl/  

Created: 2010-09-22 | Last updated: 2010-09-22

Credits: User Barbera van Schaik User Antoine van Kampen User Angela Luijf User Silvia Olabarriaga

Workflow Sff2Fasta_Blast_ParseBlast (1)

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Blast Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blast sequences against a database Parse Blast results http://www.bioinformaticslaboratory.nl/      

Created: 2010-09-22 | Last updated: 2010-09-22

Credits: User Barbera van Schaik User Antoine van Kampen User Angela Luijf User Silvia Olabarriaga

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