Workflows

Search filter terms
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Filter by curation
Results per page:
Sort by:
Showing 68 results. Use the filters on the left and the search box below to refine the results.
Tag: ebi

Workflow Find PRIDE experiments by GO (1)

Thumb
Find PRIDE experiments in Human with related information like Cell Type and Tissue location filtering results by Gene Ontology terms. This is an example of how to use the PRIDE Biomart service in Taverna. Many other options are possible by modifying the filters and attributes of this service.

Created: 2011-05-29 | Last updated: 2011-05-29

Credits: User Rafael C. Jimenez

Workflow Molecular Interactions from IntAct PSICQUI... (2)

Thumb
Get molecular interaction data in psi-mitab25 from IntAct through its REST PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:KHDRBS1".

Created: 2011-05-29 | Last updated: 2011-10-05

Credits: User Rafael C. Jimenez

Workflow EBI PICR, find cross-references for protei... (2)

Thumb
Find cross-references (based on 100% sequence identity) for protein accessions from more than 95 distinct databases. For instance input a list of IPI accessions and find cross-references for Swissprot and Ensembl. Mappings can be limited by source database, taxonomic ID and activity status.

Created: 2011-05-18 | Last updated: 2011-05-29

Credits: User Rafael C. Jimenez

Workflow Molecular Interactions from IntAct PSICQUI... (2)

Thumb
Get molecular interaction data in psi-mitab25 from IntAct through its PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:(KHDRBS1 OR HCK)". This workflow finds by itself how many queries needs to make (SOAP service limited to 200 binary interactions per call) to be able to return all the results in one file.

Created: 2011-05-17 | Last updated: 2011-07-20

Credits: User Rafael C. Jimenez

Uploader

Workflow Plotting distribution of natural product l... (1)

Thumb
 Prerequisite:  CDK -Taverna Plugin 0.5.1 http://www.ts-concepts.de/cdk-taverna2/plugin/ - To run this workflow you need a Score file which is written to text file.  - This could be generated from ScorerActivity.t2flow http://www.myexperiment.org/workflows/2121/download?version=1   Description of input ports : score_file: Path to file name that has pre computed scores. Note: While passing file as input it could be passed as list of many files or single fi...

Created: 2011-05-13 | Last updated: 2011-05-13

Credits: User Kalai

Uploader

Workflow Generate Atom Signatures of molecules give... (1)

Thumb
Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf    The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work is re...

Created: 2011-05-13 | Last updated: 2011-05-13

Credits: User Kalai

Workflow EBI_InterproScan_NewServices (2)

Thumb
This workflow performs an interproscan on provided sequencesThis workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

Created: 2011-01-17 | Last updated: 2011-01-17

Credits: User Katy Wolstencroft User Hamish McWilliam User Stian Soiland-Reyes

Attributions: Workflow EBI_InterProScan for Taverna 2 Workflow EBI_InterProScan for Taverna 2 Workflow EBI_InterProScan

Workflow Triplify namespace list from global search... (1)

Thumb
No description

Created: 2009-11-30 | Last updated: 2009-11-30

Credits: User Francois Belleau

Results per page:
Sort by: