myExperiment - Workflows

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Tag: bio2rdf

User: Francois Belleau

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Talend

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Francois Belleau

A Talend mashup to discover PARP proteins ... (3)

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A Talend workflow to answer this specific question :What is known about PARP family proteins involved in pathway according to Reactome ?by fetching RDF data from Bio2RDF`s HGNC, UniProt REST service and EBI Reactome SPARQL endpoint, all Semantic Web public resources.

Created: 2014-02-10 | Last updated: 2014-04-07

Credits: Francois Belleau

Talend

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Francois Belleau

HGNC 2 Bio2RDF rdfizer workflow (1)

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Talend workflow to convert in RDF with Bio2RDF URIs, the HGNC description of genes available at http://www.genenames.org/cgi-bin/hgnc_stats.

Created: 2013-02-27

Credits: Francois Belleau

SPARQL

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Francois Belleau

Bio2RDF Talend workflow to populate PARP s... (1)

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Talend worflow to populate a semantic mashup about PARP family proteins. The mashup uploaded in Virtuoso triplestore is available at http://parp.bio2rdf.org.

Created: 2013-01-30 | Last updated: 2013-01-31

Credits: Francois Belleau

Taverna 2

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Francois Belleau

Who is Dr Labrie according to Pubmed publi... (2)

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To use this wokflow you need to import services from To use this wokflow you need to import services from http://proxy.bio2rdf.org/bio2rdf/services.txt you can explore the loaded data at http://proxy.bio2rdf.org/fct

Created: 2010-07-08 | Last updated: 2010-07-08

Credits: Francois Belleau

Taverna 2

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Francois Belleau

ChEBI mashup from searched string (1)

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A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint.A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint. First a full text search query is done, then we do a reverse link query to get all the related topic. Finally with a describe queries we obtain the complete graph of each topic. The ntriples result is a mashup of what is known about this searched topic form ChEBI. This graph can then be loaded in a triplestore for further exploration.