Workflows

Search filter terms
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by wsdl
Filter by curation
Results per page:
Sort by:
Showing 3 results. Use the filters on the left and the search box below to refine the results.
Licence: by Wsdl: http://soap.genome.jp/KEGG.wsdl or http://www.ebi.ac.uk/ontology-lookup/OntologyQuery.wsdl or http://www.ebi.ac.uk/webservices/citexplore/v1.0/service?wsdl or http://www.ebi.ac.uk/ebisearch/service.ebi?wsdl

Workflow Entrez Gene to KEGG Pathway (5)

Thumb
This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.

Created: 2009-12-04 | Last updated: 2010-11-30

Credits: User Paul Fisher

Workflow EBI_OLS_TermInfo (1)

Thumb
Get details of an ontology term given its identifer. This workflow uses the EBI's Ontology Lookup Service (OLS) to get the details of the ontology term. The OLS suports a wide range of biological and bioinformatic ontologies. See http://www.ebi.ac.uk/ontology-lookup/ for more information.

Created: 2008-07-09

Credits: User Hamish McWilliam

Workflow EBI_CiteXplore (1)

Thumb
Perform a literature search using the EBI's CiteXplore service (http://www.ebi.ac.uk/citexplore/), and get the results in a minimal XML format containing the citation information (i.e. title, author, journal, etc.), the identifier of the citation in the source database (PubMed/Medline, Agricola, Patent Abstracts, CBA, CiteSeer, etc.) and information about abstract and full article availablity including URLs.

Created: 2008-07-09

Credits: User Hamish McWilliam

Results per page:
Sort by: