Workflows

Autodock Vina (1)

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 This workflow requires MGLTools which contains the Vision workflow framework. MGLTools maybe downloaded from https://www.nbcr.net/pub/wiki/index.php?title=CADD_Pipeline. 

Created: 2010-02-04 | Last updated: 2010-02-09

Credits: Jrensp

Get Gene Ids for Human (1)

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This workflow gets a list of gene ids (number depending on Ret_Max_value variable) for Homo sapiens. The species may be changed according to that desired, by altering the term_value string constant

Created: 2010-02-04 | Last updated: 2010-02-04

Credits: Paul Fisher

Search TP53 Somatic Mutation catalogue by ... (1)

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This workflow takes the exon, the effect and the TP53 somatic mutation database as input and retrieves the full TP53 somatic mutation description(s) by first retrieving two different outputs and arranging them according to the boolean operators (�and�, �or� and �butnot�): - first output: a TP53 somatic mutation database unique IDs list associated with the input 'exon' (done via a call to the getP53MutationIdsByExon web service) - second output: a TP53 somatic mutation database u...

Created: 2010-01-15

Credits: Achille Zappa

Triplify namespace XREF list from GO, LSRN... (1)

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TAG: banff_manifesto, xref, bio2rdf, rdfTAG: banff_manifesto, xref, bio2rdf, rdf, mashup Triplify namespace XREF list from GO, LSRN, NCBI and UniProt [myexperiment:xref_namespace2rdf] TAG: banff_manifesto, xref, bio2rdf, rdf TAG: banff_manifesto, xref, bio2rdf, rdf

Created: 2009-12-01

Credits: Francois Belleau

Triplify UniProt database external referen... (2)

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Get UniProt external database list from http://www.ncbi.nlm.nih.gov/projects/collab/db_xref.html 

Created: 2009-12-01 | Last updated: 2009-12-01

Credits: Francois Belleau

Triplify NCBI databases external reference... (1)

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Get NCBI external database list from http://www.ncbi.nlm.nih.gov/projects/collab/db_xref.html

Created: 2009-12-01 | Last updated: 2009-12-01

Credits: Francois Belleau

Triplify UniProt text search results from ... (2)

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Search all UniProt databases using search URL service and merge results into a bmuri list and a ntriples string. 

Created: 2009-11-30 | Last updated: 2009-11-30

Credits: Francois Belleau

Triplify search results from KEGG bfind SO... (3)

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This workflow use KEGG's SOAP service provided to do a BFIND serch within one of the KEGG's official database. The results are returned in RDF ntriples format. 

Created: 2009-11-30 | Last updated: 2009-11-30

Credits: Francois Belleau

Triplify KEGG database list [myexperiments... (2)

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TAG: knowledgescope, kegg, bio2rdf, banff_manifesto, rdf

Created: 2009-11-28 | Last updated: 2009-11-30

Credits: Francois Belleau

Query DBPedia for all entries with an InChI (1)

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Created: 2009-11-20

Credits: Egon Willighagen