Triplify namespace list from global search services from EBI, KEGG, NCBI and UniProt [myexperiment:search_services_namespace2rdf]

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flatten(inputs, outputs, depth) {
	for (i = inputs.iterator(); i.hasNext();) {
	    element = i.next();
		if (element instanceof Collection && depth > 0) {
			flatten(element, outputs, depth - 1);
		} else {
			outputs.add(element);
		}
	}
}

outputlist = new ArrayList();

flatten(inputlist, outputlist, 1);

Name	Type	Description
KEGG_bfind_service	workflow
UniProt_KB_search_service	workflow
NCBI_Entrez_search_service	workflow
EBI_EBEye_search_service	workflow
Flatten_List	localworker	Script flatten(inputs, outputs, depth) { for (i = inputs.iterator(); i.hasNext();) { element = i.next(); if (element instanceof Collection && depth > 0) { flatten(element, outputs, depth - 1); } else { outputs.add(element); } } } outputlist = new ArrayList(); flatten(inputlist, outputlist, 1);
Merge_String_List_to_a_String	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();
Remove_String_Duplicates	localworker	Script List strippedlist = new ArrayList(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); if (strippedlist.contains(item) == false) { strippedlist.add(item); } }
Merge_String_List_to_a_String2	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();

Name	Inputs	Outputs
parse_kegg_database_list	string	ntriples namespace
kegg_ntriples		ntriples
build_uniprot_namespace_ntriple	namespace	ntriples
UniProt_provider		ntriples
build_ncbi_ntriples	id	ntriples
ncbi_ntriples		ntriples
parse_ebeye_list	namespace	ntriples
ebeye_ntriples		ntriples

Name	Description
namespace_list
banff_manifesto_namespace_ntripes

Source	Sink
Flatten_List:outputlist	Remove_String_Duplicates:stringlist
Remove_String_Duplicates:strippedlist	Merge_String_List_to_a_String2:stringlist
KEGG_bfind_service:namespace_list	Flatten_List:inputlist
UniProt_KB_search_service:namespace_list	Flatten_List:inputlist
NCBI_Entrez_search_service:namespace_list	Flatten_List:inputlist
EBI_EBEye_search_service:namespace_list	Flatten_List:inputlist
EBI_EBEye_search_service:ebeye_namespace_ntriples	Merge_String_List_to_a_String:stringlist
NCBI_Entrez_search_service:ncbi_namespace_ntriples	Merge_String_List_to_a_String:stringlist
KEGG_bfind_service:kegg_namespace_ntriples	Merge_String_List_to_a_String:stringlist
UniProt_KB_search_service:uniprotkb_namespace_ntriples	Merge_String_List_to_a_String:stringlist
Merge_String_List_to_a_String2:concatenated	namespace_list
Merge_String_List_to_a_String:concatenated	banff_manifesto_namespace_ntripes

Triplify namespace list from global search services from EBI, KEGG, NCBI and UniProt [myexperiment:search_services_namespace2rdf]

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