Workflow26query00
hk1
hexokinase
paget disease
pdb4
2009-11-30 15:00:54.525 EST
hk1
2009-11-30 15:01:04.550 EST
uniprotkb_search_all_ntriplesbmurissearch_count_ntripleso1UniProt_KB_namespacesnamespace_list11net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUniProt_KB_text_searchquery0uniprotkb_namespace0bmuris11uniprotkb_search_ntriples00search_count_ntriples00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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workflow
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workflow
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workflow
[B
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCountin0out00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
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in
0
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUniProt_KB_text_searchqueryUniProt_KB_text_searchuniprotkb_namespaceMerge_String_List_to_a_StringstringlistMerge_String_List_to_a_String2stringlistFlatten_ListinputlistCountinuniprotkb_search_all_ntriplesbmurissearch_count_ntripleso1
FrancoisBelleau@yahoo.ca
2009-11-30 15:04:12.888 EST
Triplify UniProt text search results from all databases [myexperiments:uniprotkb_search_all2rdf]
2009-11-30 15:04:19.312 EST
Search all UniProt databases using search URL service and merge results into a bmuri list and a ntriples string.
TAG: knowledgescope, uniprotkb, bio2rdf, search_all, rdf
2009-11-30 15:43:24.857 EST
Triplify UniProt text search results from all databases [myexperiments:uniprotkb_search_all2rdf]
TAG: knowledgescope, uniprotkb, bio2rdf, search_all, rdf
2009-11-30 15:04:11.47 EST
TAG: knowledgescope, uniprotkb, bio2rdf, search_all, rdf
2009-11-30 15:04:31.939 EST
Workflow18uniprotkb_namespace_ntriplesnamespace_listuniprotkb_namespacesvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
uniprot,uniref,uniparc,citations,keywords,locations,taxonomy
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1
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1.0
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workflow
java.lang.String
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java.lang.String
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0
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1
split
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l('text/plain')
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workflow
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUniProt_providerntriples00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
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1.0
1000
5000
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsstring10string20output00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
string1
0
'text/plain'
java.lang.String
true
string2
0
'text/plain'
0
output
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstringMerge_String_List_to_a_Stringstringlistbuild_uniprot_namespace_ntriplenamespaceConcatenate_two_stringsstring1Concatenate_two_stringsstring2uniprotkb_namespace_ntriplesnamespace_list
TAG: knowledgescope, uniprot, bio2rdf, banff_manifesto
2009-11-30 13:38:19.700 EST
FrancoisBelleau@yahoo.ca
2009-11-30 13:37:40.71 EST
[myexperiments:uniprot_namespace2rdf]
2009-11-30 13:37:12.133 EST
TAG: knowledgescope, uniprotkb, bio2rdf, banff manifesto
2009-11-30 14:29:57.917 EST
TAG: knowledgescope, uniprotkb, bio2rdf, banff_manifesto
2009-11-30 14:26:44.102 EST
Triplify UniProt database list [myexperiments:uniprot_namespace2rdf]
2009-11-30 13:38:50.804 EST
Triplify UniProt database list [myexperiments:uniprotkb_namespace2rdf]
2009-11-30 14:26:50.121 EST
TAG: knowledgescope, uniprotkb, bio2rdf, banff_manifesto
2009-11-30 14:32:26.275 EST
Workflow20query00
hk1
2009-11-30 14:14:27.858 EST
hk1
hexokinase
pdb4
paget disease
2009-11-30 14:36:43.164 EST
uniprotkb_namespace00
uniprot
2009-11-30 14:14:21.704 EST
uniprot
uniref
citations
2009-11-30 14:37:40.508 EST
uniprot
uniref
uniparc
citations
keywords
locations
taxonomy
2009-11-30 14:40:31.814 EST
bmurissearch_count_ntriplesuniprotkb_search_ntriplesurlbuild_uniprot_search_urlstring20string10output00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
string1
0
'text/plain'
java.lang.String
true
string2
0
'text/plain'
0
output
0
'text/plain'
UserNameHere
2009-10-20 20:58:35.706 EDT
UserNameHere
2009-10-20 20:39:25.123 EDT
UserNameHere
2009-10-20 20:31:15.472 EDT
UserNameHere
2009-10-20 20:55:40.637 EDT
UserNameHere
2009-10-20 20:53:01.241 EDT
UserNameHere
2009-10-29 08:29:41.81 EDT
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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workflow
java.lang.String
true
url
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java.lang.String
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0
contents
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1.0
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workflow
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1.0
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebuild_bmuristring10string20output00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
string1
0
'text/plain'
java.lang.String
true
string2
0
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0
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UserNameHere
2009-10-20 21:00:43.683 EDT
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
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1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebuild_ntriplesstringlist1search0namespace0count_ntriples00search_ntriples00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
stringlist
1
text/plain
java.lang.String
true
namespace
0
text/plain
java.lang.String
true
search
0
text/plain
0
count_ntriples
0
text/plain
0
search_ntriples
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebuild_uniprot_search_urlstring2build_uniprot_search_urlstring1Get_Web_Page_from_URLurlSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexbuild_bmuristring1build_bmuristring2build_ntriplesstringlistbuild_ntriplessearchbuild_ntriplesnamespacebmurissearch_count_ntriplesuniprotkb_search_ntriplesurl
test values:
uniprot
hk1
2009-10-20 20:31:39.492 EDT
TAG: knowledgescope, uniprotkb, bio2rdf, search, rdf
2009-11-30 14:49:12.799 EST
test values:
namespace=uniprot
search=hk1
2009-10-21 22:36:04.727 EDT
test values:
namespace=uniprot
query=hk1
query=pdb4
query=paget disease
2009-10-29 08:28:57.924 EDT
Triplify UniProt text search results [myexperiments:uniprotkb_search2rdf]
2009-11-30 14:39:33.643 EST
FrancoisBelleau@yahoo.ca
2009-11-30 14:39:17.528 EST
TAG: knowledgescope, uniprotkb, bio2rdf, search
2009-11-30 14:39:48.924 EST
2009-11-30 14:24:04.541 EST
test values:
namespace=uniprot
query=hk1
query=pdb4
2009-10-29 08:18:58.125 EDT