Triplify UniProt database list [myexperiments:uniprotkb_namespace2rdf]

Value

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

Script

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

Script

String desc, uri, nsid, title;
	
title = "";
if (namespace.equals("uniprot")) title = "Protein knowledgebase";
if (namespace.equals("uniref")) title = "Sequence clusters";
if (namespace.equals("uniparc")) title = "Sequence archive";
if (namespace.equals("citations")) title = "Publications cited in or computationally mapped to UniProtKB";
if (namespace.equals("taxonomy")) title = "Organisms are classified in a hierarchical tree structure";
if (namespace.equals("keywords")) title = "UniProtKB entries are tagged with keywords";
if (namespace.equals("locations")) title = "Subcellular location";

uri = "";
nsid = "bm:ns:" + namespace;

ntriples =            "\n" + uri + "   .";
ntriples = ntriples + "\n" + uri + "  \"" + nsid + "\" .";
ntriples = ntriples + "\n" + uri + "   .";
ntriples = ntriples + "\n" + uri + "  \"http://www.uniprot.org/" + namespace +"\" .";
ntriples = ntriples + "\n" + uri + "  \"" + namespace +"\" .";
ntriples = ntriples + "\n" + uri + "  \""+ title +"\" .";
ntriples = ntriples + "\n" + uri + "  \""+ title +" ["+nsid+"]\" .";

Script

ntriples =            "\n   .";
ntriples = ntriples + "\n  \"bm:ns:uniprotkb\" .";
ntriples = ntriples + "\n  \"http://www.uniprot.org\" .";
ntriples = ntriples + "\n  \"uniprotkb\" .";
ntriples = ntriples + "\n  \"Universal Protein Resource\" .";
ntriples = ntriples + "\n  \"Universal Protein Resource [ns:uniprotkb]\" .";

Script

output = string1 + string2;