Triplify search results from all KEGG databases [myexperiments:kegg_search_all2rdf]

None

flatten(inputs, outputs, depth) {
	for (i = inputs.iterator(); i.hasNext();) {
	    element = i.next();
		if (element instanceof Collection && depth > 0) {
			flatten(element, outputs, depth - 1);
		} else {
			outputs.add(element);
		}
	}
}

outputlist = new ArrayList();

flatten(inputlist, outputlist, 1);

Name	Type	Description
Query_KEGG_by_namespace	workflow
KEGG_namespaces	workflow
Flatten_List	localworker	Script flatten(inputs, outputs, depth) { for (i = inputs.iterator(); i.hasNext();) { element = i.next(); if (element instanceof Collection && depth > 0) { flatten(element, outputs, depth - 1); } else { outputs.add(element); } } } outputlist = new ArrayList(); flatten(inputlist, outputlist, 1);
Merge_String_List_to_a_String2	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();
Merge_String_List_to_a_String	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();
Count	beanshell	Script out = in;

Name	Inputs	Outputs
Count	in	out
build_bfind_query	kegg_namespace search	search_query
extract_bmuri	stringlist namespace search	bmuris count_ntriple
build_search_ntriple	bmuri search namespace	search_ntriple
parse_kegg_database_list	string	ntriples namespace
kegg_ntriples		ntriples

Name	Description
bmuris
kegg_search_all_ntriples
search_count_ntriples
o1

Source	Sink
query	Query_KEGG_by_namespace:query
Count:out	Query_KEGG_by_namespace:kegg_namespace
Query_KEGG_by_namespace:kegg_search_bmuris	Flatten_List:inputlist
Query_KEGG_by_namespace:kegg_search_ntriples	Merge_String_List_to_a_String2:stringlist
Query_KEGG_by_namespace:search_count_ntriples	Merge_String_List_to_a_String:stringlist
KEGG_namespaces:kegg_namespace_list	Count:in
Flatten_List:outputlist	bmuris
Merge_String_List_to_a_String2:concatenated	kegg_search_all_ntriples
Merge_String_List_to_a_String:concatenated	search_count_ntriples
Query_KEGG_by_namespace:search_count_ntriples	o1

Triplify search results from all KEGG databases [myexperiments:kegg_search_all2rdf]

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