getTimololFromMassBank
Created: 2009-11-10 08:58:05
Last updated: 2009-11-10 08:59:56
This workflow will retrieve a peaklist from a fixed entry (Timolol) from the MassBank spectral library. Note, the API is still in alpha, as of 10.11.2009.
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Workflow Components
Authors (0)
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Processors (7)
| Name |
Type |
Description |
| getPeak |
wsdl |
Wsdlhttp://www.massbank.jp/api/services/MassBankAPI?wsdlWsdl OperationgetPeak |
| getPeak_input |
xmlsplitter |
|
| String_Constant |
stringconstant |
ValueKO009304 |
| XPath_From_Text |
localworker |
Scriptimport org.dom4j.Document;
import org.dom4j.Node;
import org.dom4j.io.SAXReader;
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
Document document = reader.read(new StringReader(xmltext));
List nodelist = document.selectNodes(xpath);
// Process the elements in the nodelist
ArrayList outputList = new ArrayList();
ArrayList outputXmlList = new ArrayList();
String val = null;
String xmlVal = null;
for (Iterator iter = nodelist.iterator(); iter.hasNext();) {
Node element = (Node) iter.next();
xmlVal = element.asXML();
val = element.getStringValue();
if (val != null && !val.equals("")) {
outputList.add(val);
outputXmlList.add(xmlVal);
}
}
List nodelist=outputList;
List nodelistAsXML=outputXmlList; |
| XPath_From_Text0 |
localworker |
Scriptimport org.dom4j.Document;
import org.dom4j.Node;
import org.dom4j.io.SAXReader;
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
Document document = reader.read(new StringReader(xmltext));
List nodelist = document.selectNodes(xpath);
// Process the elements in the nodelist
ArrayList outputList = new ArrayList();
ArrayList outputXmlList = new ArrayList();
String val = null;
String xmlVal = null;
for (Iterator iter = nodelist.iterator(); iter.hasNext();) {
Node element = (Node) iter.next();
xmlVal = element.asXML();
val = element.getStringValue();
if (val != null && !val.equals("")) {
outputList.add(val);
outputXmlList.add(xmlVal);
}
}
List nodelist=outputList;
List nodelistAsXML=outputXmlList; |
| String_Constant0 |
stringconstant |
Value//ax21:intensities |
| String_Constant1 |
stringconstant |
Value//ax21:mzs |
Outputs (2)
| Name |
Description |
| mzs |
|
| intensities |
|
Datalinks (8)
| Source |
Sink |
| getPeak_input:output |
getPeak:parameters |
| String_Constant:value |
getPeak_input:ids |
| getPeak:parameters |
XPath_From_Text:xml-text |
| String_Constant0:value |
XPath_From_Text:xpath |
| getPeak:parameters |
XPath_From_Text0:xml-text |
| String_Constant1:value |
XPath_From_Text0:xpath |
| XPath_From_Text0:nodelist |
mzs |
| XPath_From_Text:nodelist |
intensities |
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