This workflow uses one or more services that are deprecated as of 31st December 2012 (almost 12 years ago), and may no longer function. Show details...

What is [query] from NCBI, EBI, UniProt and KEGG ?

Created: 2009-11-03 04:29:15 Last updated: 2009-11-03 04:29:19

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test values:

query = paget disease query = pdb4 query = hk1 query = h1n1

This rdfiser query those four federated search services EB-Eye, KEGG LinkDB, NCBI Entrez and UniProt knowledgebase. RDF triples are returned for search statistics with Bio2RDF normalised URIs.

This workflow should be used responsibly because it can generate high load at the provider resources.

test values:

query = paget disease query = pdb4 query = hk1 query = h1n1

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Workflow Components

Authors (1)

Titles (1)

Descriptions (3)

Dependencies (0)

Inputs (1)

Name	Description
query

Processors (4)

Name	Type	Description
NCBI_search_all_count	workflow
EBI_search_all_count	workflow
UniProt_search_all_count	workflow
KEGG_search_all_count	workflow

Beanshells (13)

Name	Inputs	Outputs
build_ncbi_ntriples	id	ntriples
ncbi_ntriples		ntriples
ncbi_search_by_namespace	term db field retstart retmax mindate maxdate rettype	outputText
build_search_count_ntriples	query namespace count	ntriple
parse_ebeye_list	namespace	ntriples
ebeye_ntriples		ntriples
build_search_ntriple	namespace query count	ntriple
build_uniprot_search_url	string1 string2	output
Split_string_into_string_list_by_regular_expression	string regex	split count
build_count_ntriples	namespace search count	count_ntriples
build_bfind_query	kegg_namespace search	search_query
Split_string_into_string_list_by_regular_expression	string regex	split count
build_count_ntriples	count namespace search	count_ntriples

Outputs (4)

Name	Description
ncbi_count
ebi_count
uniprot_count
kegg_count

Datalinks (8)

Source	Sink
query	NCBI_search_all_count:query
query	EBI_search_all_count:query
query	UniProt_search_all_count:query
query	KEGG_search_all_count:query
NCBI_search_all_count:ncbi_search_all_count_ntriples	ncbi_count
EBI_search_all_count:ebeye_search_all_count_ntriples	ebi_count
UniProt_search_all_count:uniprot_search_all_count_ntriples	uniprot_count
KEGG_search_all_count:kegg_search_count_all_ntriples	kegg_count

Coordinations (3)

Controller	Target
NCBI_search_all_count	EBI_search_all_count
UniProt_search_all_count	KEGG_search_all_count
EBI_search_all_count	UniProt_search_all_count

Information Workflow Type

Taverna 2

Information Uploader

Francois Belleau

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

(People/Groups)

Francois Belleau

Information Attributions (0)

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None

Information Tags (8)

Uploader tags

bio2rdf
|
cognoscope
|
eb-eye
|
kegg
|
ncbi
|
rdfiser
|
search
|
uniprot

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Information Favourited By (0)

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Information Statistics

3346 viewings

2012 downloads

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Citations (0)

None

Version History

In chronological order:

What is (...) from EB-eye, KEGG, NCBI and UniProt ?

Created by Francois Belleau on Friday 30 October 2009 05:53:29 (UTC)

Last edited by Francois Belleau on Friday 30 October 2009 06:01:17 (UTC)
What is [query] from NCBI, EBI, UniProt and KEGG ?

Created by Francois Belleau on Tuesday 03 November 2009 04:29:15 (UTC)

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