Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Created: 2010-03-14 21:26:05 Last updated: 2010-06-23 20:20:41

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Queries Bio2RDF for proteins of which the title contains 'HIV', downloads them using the EMBL webservices and opens them in Bioclipse for visualization with Jmol.

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Information Workflow Type

Bioclipse Scripting Language

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Egon Willighagen

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Information Version 2 (of 3)

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Egon Willighagen

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4118 viewings

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Version History

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Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Created by Egon Willighagen on Sunday 11 October 2009 21:25:58 (UTC)
Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Created by Egon Willighagen on Sunday 14 March 2010 21:26:05 (UTC)

Revision comment:

Version for Bioclipse 2.4. Use version 1 for Bioclipse 2.2.
Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Created by Egon Willighagen on Wednesday 23 June 2010 20:20:40 (UTC)

Revision comment:

Updated URI for Bio2RDF SPARQL end point.

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Peter Ansell

Title: Another way to do this

Rating: not yet rated

Created: 2010-05-11 00:40:53 | Updated: 2010-05-11 00:40:53

Have you tried using the following URL? http://bio2rdf.org/searchns/pdb/HIV Cheers, Peter

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